Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq431 518 4e-142 seq9 93.3 5e-14 >seq431 Length=160619 Score = 518 bits (574), Expect = 4e-142 Identities = 707/987 (72%), Gaps = 0/987 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| | || ||||| ||||| | Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || |||| |||||||| || ||| Sbjct 1504 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 1445 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 1444 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 1385 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || |||||||| || |||| | || || |||||| | ||||| ||||| ||| Sbjct 1384 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATC 1325 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||||||||| |||||||| ||||||||| || | | | Sbjct 1324 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1265 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | |||||||| | |||||||||| | | | Sbjct 1264 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1205 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || ||| Sbjct 1204 CTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCT 1145 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | |||||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 1144 GTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1085 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| | || ||||| || || || ||||| || ||||| || Sbjct 1084 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCA 1025 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 1024 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 965 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 964 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 905 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| ||||| ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 904 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 845 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| ||||||||| || | | | |||||||||||||| Sbjct 844 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCT 785 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| || || | ||||| ||| || | ||||| | || ||||| |||||| Sbjct 784 GCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAAC 725 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || |||||||| ||||||||||| || || ||| | | ||| | || ||| Sbjct 724 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 665 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 664 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 605 Query 172780 CACAACTTCCCATTAGACCTTGCTTCT 172806 || |||||||| ||||||| ||| || Sbjct 604 CATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 354 bits (392), Expect = 1e-92 Identities = 699/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| || || |||||||| || | || ||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || |||||||| ||| || ||||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTA 34932 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 34933 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 34992 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 34993 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTT 35052 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || ||||| |||||||| ||| | ||||| ||||| | || || Sbjct 35053 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGA 35112 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 35113 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 35172 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 | || | || || |||||||| || |||||||||| || || || ||| Sbjct 35173 TCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 35232 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || ||||| || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 35233 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAAC 35292 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| ||||| || || | || | || | ||||| || |||||| Sbjct 35293 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 35352 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || ||| | || || || | ||||| || ||| ||| Sbjct 35353 GGTGCTACCGTGGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 35394 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 35395 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 35451 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 35452 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 35511 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 35512 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 35571 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 35572 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 35631 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || |||||||||||||| || ||||| ||| | || || ||||| | || Sbjct 35632 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 35691 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || |||| Sbjct 35692 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 35751 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 35752 CGTGGAAACGCTCTTTAA 35769 >seq9 Length=38630433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || |||||||| | || || |||||||| ||||||||||||||||| Sbjct 2727606 TGGAGCTGATGTTTGCCATCTAAATCTCCACAAAACATTCTGCATTCCACATGGAGGTGG 2727547 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || |||||| | || ||||||||||| || ||| | |||||||| Sbjct 2727546 TGGACCTGGCATGGGACCTATTGGTGTCAAGAAGCATTTGGCACCATTT 2727498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048031874160