Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq431 637 6e-178 >seq431 Length=160619 Score = 637 bits (706), Expect = 6e-178 Identities = 723/964 (75%), Gaps = 8/964 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || |||| ||||||||||| |||||||||| || | ||| | ||||| Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||| ||| | || || ||||| || ||||| || ||||| || || Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | ||||| ||||| ||||||||||| || || ||||||| || Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || || ||||||| | || ||||| | |||||| | | || | || || Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 1242 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | ||||||| ||||||||||||||| || ||| | |||||||| || |||||| Sbjct 1241 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGC 1182 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || | ||||| ||||| ||||||| |||| Sbjct 1181 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGG 1122 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| || || |||| ||||| || |||||||| || || ||||||| ||| | Sbjct 1121 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 1062 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| ||||| |||||||| |||||||| || || |||||||| || ||||| || Sbjct 1061 TGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 1002 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| || || || || ||||| ||||| ||||| ||||| || ||| | | Sbjct 1001 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 942 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || || || | || || || | ||||||| ||||||||||| ||||| Sbjct 941 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 882 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 || ||||| ||||| || || ||||| || || || || |||||||||||||| || Sbjct 881 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 822 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 |||||||| || ||||| || ||||||||||| ||||| |||||||| || || ||||| Sbjct 821 TTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTG 762 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 ||||||||| | ||| | ||| ||||| |||||||| || |||||||| |||||||| Sbjct 761 GTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 702 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 || | ||||| |||| |||||||| |||| || ||||| ||| | | |||||||| Sbjct 701 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 642 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | ||||||||||||||||||||||| ||||| || || |||||||| ||||| || || Sbjct 641 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 582 Query 182777 TGCT 182780 |||| Sbjct 581 TGCT 578 Score = 562 bits (622), Expect = 4e-155 Identities = 732/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || ||||| || || | || || Sbjct 34765 GATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTT 34824 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 34825 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34884 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTG 183370 ||||| |||||| | || ||||||| | ||||| ||| | ||||||| | || || | Sbjct 34885 TATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCCGCAG 34942 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || |||||| | | | | |||||| | ||||||| ||||||||||| | | Sbjct 34943 TTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCAC 35002 Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 |||| || ||| || ||||| ||| | || || || |||| ||||| || ||||||| Sbjct 35003 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACG 35062 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA 183550 | || || | || || ||||| ||| | || || ||||||||||| || | || Sbjct 35063 GCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAAT 35122 Query 183551 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC 183610 | || ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 35123 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 35182 Query 183611 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 | || |||||||| ||||| ||| ||||||||||| || ||||| || |||||||| | Sbjct 35183 TGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTA 35242 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATA 183730 | ||| ||||| | | || | || || || || || ||||| || ||||| || |||| Sbjct 35243 TATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATA 35302 Query 183731 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAG 183790 ||||||||||||| ||| || | || | || || || | ||||| ||||||| || | Sbjct 35303 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 35362 Query 183791 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCA 183850 | || ||||| || | ||||||||| || ||||| |||||| || ||| | | | Sbjct 35363 TGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 35422 Query 183851 CTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCG 183910 |||||| ||||| || ||||| ||||| || || || || || ||||| |||||||| | Sbjct 35423 CTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 35482 Query 183911 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183970 ||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 35483 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 35542 Query 183971 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATT 184030 || | ||| | | || |||| | | || || ||||| || || ||||| ||||| | Sbjct 35543 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACT 35602 Query 184031 TTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGA 184090 | || || || ||| | ||||| |||||||| ||||||||||| |||||||| || | Sbjct 35603 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 35662 Query 184091 ACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGA 184150 | || ||| | || || || | ||||| ||| | || || ||||| || ||||| | Sbjct 35663 ATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 35722 Query 184151 ATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 35723 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATG 35771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611692704487800