Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq431 699 0.0 >seq431 Length=160619 Score = 699 bits (774), Expect = 0.0 Identities = 733/961 (76%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| |||| ||||| |||||| | |||||||| || | |||| || Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| ||| ||||| |||||||| || || || ||||||||||||||||| Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | ||||| ||||| || || |||||||| | |||| | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | ||||| || || || |||||||| ||| | | |||||||| Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| || |||||||| || | |||| | |||||| | | ||||||||||| Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1239 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 ||||||||||||||||||||||| || ||| || |||||||| |||||||| || Sbjct 1238 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGT 1179 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || ||||| || ||||||||||| |||||| || ||||||| ||||||| Sbjct 1178 TGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCA 1119 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| ||||| ||||||||||||||||| || |||||||||||||| |||| ||| | || Sbjct 1118 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 1059 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || ||||| ||||| |||||||| || || |||||| | ||||| ||||| || Sbjct 1058 ATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 999 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCG 165389 |||||| || || || ||| |||||||||||| | || || || | || | Sbjct 998 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 939 Query 165390 CGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGAC 165449 || || || |||| || | || | ||||| | || || ||||| ||||| || Sbjct 938 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 879 Query 165450 CTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTT 165509 ||||| ||||| ||||| || || || || || || | || |||||||| || || Sbjct 878 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 819 Query 165510 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTT 165569 ||||||||| ||||| | ||||||||||| || || ||||||||||| ||||||||||| Sbjct 818 CAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 759 Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 ||| ||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 758 CACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 699 Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689 | | ||||||||||| | || ||| |||||||| || | ||||||||| Sbjct 698 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 639 Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || |||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 638 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 579 Query 165750 T 165750 | Sbjct 578 T 578 Score = 596 bits (660), Expect = 2e-165 Identities = 730/990 (74%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| | ||| Sbjct 34783 GACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 34842 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| | || || || || || || || ||||||||||||||| | || Sbjct 34843 TTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 34902 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || ||| |||| || ||||| ||||||| | || |||||||||||||| || || Sbjct 34903 AGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATA 34960 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | |||||| | | | || ||||||||||| || ||||| ||||| | | Sbjct 34961 GTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 35020 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | ||||||||||||||||| ||||| | ||||| | Sbjct 35021 GGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGGCGCTTTCGGACTAATAG 35080 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||| ||| | || || |||||| | || || ||| | | | || || || |||||| Sbjct 35081 GTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAAT-TGCGACCTTATAATGCA 35139 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || |||||||| |||||||| || ||| ||| || || || || || || ||| Sbjct 35140 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 35199 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 ||||| ||||||| || || || ||| || || |||| || || |||||| |||| Sbjct 35200 CAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTC 35259 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || | |||||||| || || |||||| |||||||||||||||||||||| || || ||| Sbjct 35260 TTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGT 35319 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | ||| |||| | || || ||||||| ||| || || || ||| | | | Sbjct 35320 GTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTGGAAAATACTTTATTT 35379 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 |||||||||| |||||||| ||| || || || | ||||||| |||||||| Sbjct 35380 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 35439 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 ||||||||||| || || ||||||| |||||| || ||||| || |||| ||| ||| Sbjct 35440 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 35499 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 35500 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 35559 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | | ||||| ||||| ||||| ||||| |||||||| |||||||| ||| | Sbjct 35560 CTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 35619 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 35620 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 35679 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 ||||| ||| |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 35680 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 35739 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 35740 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 35769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563657763277440