Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5 187 6e-42 seq6 170 4e-37 seq7 168 1e-36 seq9 165 2e-35 seq2 152 1e-31 seq1 150 4e-31 seq3 87.8 4e-12 >seq5 Length=39371879 Score = 187 bits (206), Expect = 6e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||||||||| ||||| || || || ||||| || |||||||| || | || ||| Sbjct 2688439 AGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAGGTCCTC 2688498 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || |||||||| || |||||||| | ||||||||||||||| || || ||||| Sbjct 2688499 CCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGGATCCCTTCC 2688558 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||| ||||| ||||| |||||||| || || || || ||||| Sbjct 2688559 TTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGGGTT 2688618 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||||||||| ||||| || || | |||||| Sbjct 2688619 ATAGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2688656 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| ||||| ||||| ||||| || | ||| | || || || Sbjct 2688676 ACAAGGTGGAGAGTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCC 2688735 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || || |||||||| ||||| |||||||||||||| || Sbjct 2688736 AGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGG 2688795 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| || || ||||| ||||| || ||||| ||||| | || || Sbjct 2688796 ATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTG 2688855 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| || || | |||||| Sbjct 2688856 CCGGTCAAAGTTTTGACAAAGATTTGCAT 2688884 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| ||||| || ||||| || | ||| |||||||| || Sbjct 2688220 ACAAGGTGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCC 2688279 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || |||||||| | ||| || ||||| || || ||||| || || ||| Sbjct 2688280 AATTGCTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGA 2688339 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| || || || || |||||||||||||| || | ||| | || ||| Sbjct 2688340 ATCTTTGCCTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTT 2688399 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | |||||| Sbjct 2688400 CCAGTCAAGGTCTTGACAAAAATCTGCATT 2688429 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || || ||||| || | || | || |||||| Sbjct 2688904 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGACCGTCTTCG 2688963 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || | ||| ||||| || || || ||||| |||||||| Sbjct 2688964 AGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGG 2689023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||||| |||||||| ||||| | || || Sbjct 2689024 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACTTCGAGGGTGATGGTTTTA 2689083 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| | ||||| Sbjct 2689084 CCGGTCAAGGTTTTGACGAAGATCTGCAT 2689112 Score = 136 bits (150), Expect = 9e-27 Identities = 157/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || |||||||| || | || | || |||||| Sbjct 2689132 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCGTCTTCG 2689191 Query 194992 AGCTGCTTACC-TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || |||||||| || | ||| ||||| || || || ||||| |||||||| Sbjct 2689192 AGCTGTTTGCCACGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTG 2689251 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| || |||||||| ||||| || || || || || | ||||| Sbjct 2689252 GATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTT 2689311 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| ||||| | ||||| Sbjct 2689312 GCCGGTCAGGGTTTTCACGAAGATCTGCAT 2689341 >seq6 Length=26303135 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| |||||||| | ||||| || |||||||| ||||| || ||||| || | ||||| Sbjct 25054323 GAGCCTCAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCG 25054264 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || || |||||||| | ||| |||||||| || || ||||| Sbjct 25054263 ACCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTC 25054204 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| ||||| || |||||||| || ||||| ||||| ||||| Sbjct 25054203 CTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGT 25054144 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || |||| || || ||||| | ||||| Sbjct 25054143 TATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 25054105 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || |||||||| |||||||| || |||||||||||||| || ||||| || ||||| Sbjct 25054545 CAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATC 25054486 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || || || || | | ||| || ||||| ||||| ||||| ||||| Sbjct 25054485 TTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTC 25054426 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| ||| ||| || || |||||||| ||||| || ||||| || | |||| || Sbjct 25054425 CTGAATCTTTGCCTTAACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAATGGT 25054366 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| ||| || ||||| | ||||| Sbjct 25054365 TTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||||||||| | |||| || || ||| Sbjct 25054085 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCGTCCTCG 25054026 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| | ||||||||| || || || ||||| ||||| || Sbjct 25054025 AGCTGCTTCCCAGCAAAGATAAGCCTTTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGG 25053966 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || ||||| ||||| || ||||| ||||| | ||||| Sbjct 25053965 ATCTTGGCCTTCACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATTGTCTTG 25053906 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 25053905 CCGGTGAGTGTCTTAACGAAGATCTGCAT 25053877 >seq7 Length=21614486 Score = 168 bits (186), Expect = 1e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || |||| | ||||||||| || |||||||| || || ||||||||||| ||||| || Sbjct 2883478 CTAAGTCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTG 2883537 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| ||||| || |||||||| | ||||||||||| || || ||| Sbjct 2883538 CGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCT 2883597 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||||||||| || ||||| || ||||| ||||| || |||||||| || ||| Sbjct 2883598 TCCTTGTCTTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCCACCTCGAGG 2883657 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| || || | ||||| Sbjct 2883658 GTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2883698 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || ||||||||||| ||||| || | ||||| || Sbjct 2896480 ACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCT 2896539 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || |||||||| | ||||||||||| || || ||||| |||||||| Sbjct 2896540 AGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGG 2896599 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || ||||| ||||| || |||||||| || ||||| | ||||| Sbjct 2896600 ATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTG 2896659 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 2896660 CCAGTAAGGGTTTTCACAAAGATCTGCAT 2896688 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| ||||| ||||||||||| ||||| || |||||||| || | ||| Sbjct 2896029 GTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCAAGCGTCCTCCCATCCTCCAACTG 2896088 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || | ||||| |||||||| || ||||| ||||| || || || Sbjct 2896089 TTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATCTT 2896148 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || |||||||| || ||||| || ||||| | ||||| |||||||| || Sbjct 2896149 AGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATTGTCTTTCCAGT 2896208 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 2896209 GAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| ||||| ||||||||||| ||||| || |||||||| || | ||| Sbjct 2883039 GTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCAAGCGTCCTCCCATCCTCCAACTG 2883098 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || | ||||| |||||||| || ||||| ||||| || || || Sbjct 2883099 TTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATCTT 2883158 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || |||||||| || ||||| || ||||| | ||||| |||||||| || Sbjct 2883159 AGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCAGT 2883218 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | |||||| Sbjct 2883219 GAGAGTCTTCACAAAAATTTGCAT 2883242 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| |||||||| || || |||||||| || || ||||| | ||||| || Sbjct 2895568 ACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 2895627 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| || ||||| | | || |||||||||||||| || || ||||| ||| Sbjct 2895628 AACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGA 2895687 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || || ||||| ||||| || || || || || ||||| | || || Sbjct 2895688 ATCTTTGCTTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTC 2895747 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 2895748 CCAGTCAATGTCTTGACAAATATCTGCAT 2895776 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| |||||||| || || |||||||| || || ||||| | ||||| || Sbjct 2882578 ACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 2882637 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| | | || |||||||||||||| || || ||||| ||| Sbjct 2882638 AACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGA 2882697 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || || ||||| ||||| || || || || || ||||| | || || Sbjct 2882698 ATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTC 2882757 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 2882758 CCAGTCAAGGTCTTCACAAATATCTGCAT 2882786 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | ||| || | || || || ||||| ||||| || || || || ||||| || Sbjct 2895783 TCTAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGT 2895842 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||||||||||| |||||||| || || || || | | |||||||| || || || || Sbjct 2895843 CCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACC 2895902 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || ||||| || || ||||| || ||||| ||||| || || ||||| || | Sbjct 2895903 CTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAA 2895962 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || ||||| ||||| || || | |||||| Sbjct 2895963 AGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2896005 >seq9 Length=38630433 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| || || ||||| ||||||||||| ||||| |||| || ||||| Sbjct 27803244 ACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCA 27803185 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| | || ||||| || |||||||||||||| |||||||| Sbjct 27803184 AGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGG 27803125 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || || ||||| || ||||| | || || Sbjct 27803124 ATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTG 27803065 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 27803064 CCGGTTAGGGTTTTCACGAAGATCTGCAT 27803036 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| |||| |||||||||||||||||||| || || || |||||||| ||||| || || Sbjct 27803710 GAGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCT 27803651 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || | |||||| || ||||| || | | || || || ||||| || ||||| Sbjct 27803650 GCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTC 27803591 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || |||||| ||||||||| ||||| || |||||||| || || || || || Sbjct 27803590 CTTATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGAGT 27803531 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || ||||| ||||| ||||| | ||||| Sbjct 27803530 AATAGTTTTCCCGGTCAAGGTTTTAACGAAAATCTGCAT 27803492 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || |||||||| || || || || | || || ||| Sbjct 27803472 ACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCGTCCTCG 27803413 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||| |||||||| ||||| ||||| || |||||||| Sbjct 27803412 AGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 27803353 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || ||||| || ||||| |||||||| || | ||||| Sbjct 27803352 ATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTG 27803293 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 27803292 CCGGTTAGGGTTTTGACGAAGATCTGCAT 27803264 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || || || |||||||| |||||||| | |||||| || Sbjct 27803928 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTACGCCCATCCTCC 27803869 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || ||||| || || | || || || || ||||| || || || |||||| Sbjct 27803868 AATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGA 27803809 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| || || || || ||||| ||||| ||||| |||| ||||||| Sbjct 27803808 ATTTTCGCCTTCACGTTATCGATTGTATCAGAACTCTCCACCTCAAGCGTAATCGTCTTT 27803749 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 27803748 CCAGTCAGCGTCTTCACGAAGATCTGCAT 27803720 >seq2 Length=41236440 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || ||||| || || ||||| || || | || ||||| Sbjct 32406500 ACCAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCA 32406559 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||||||||| ||||| |||||||| |||||||| Sbjct 32406560 AGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 32406619 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||| || || | ||| | ||||| Sbjct 32406620 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTA 32406679 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 32406680 CCCGTTAGGGTTTTCACGAAGATCTGCAT 32406708 >seq1 Length=37323695 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || || || ||||| ||||| || || || |||||||| ||||| Sbjct 11148450 CAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTTCCATC 11148391 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || | ||| |||||||| || || || || || || Sbjct 11148390 TTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATC 11148331 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || ||| ||| || || ||||||||||| ||||| || || || | || | || Sbjct 11148330 TTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAATGTGATAGT 11148271 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || | ||| || || || | |||||| Sbjct 11148270 CTTTCCGGTAAGAGTCTTCACAAAAATTTGCAT 11148238 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || || ||||||||||| ||||| | || | || |||||| Sbjct 32435706 ACGAGGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCG 32435765 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| || || || || || ||||| ||||| || Sbjct 32435766 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 32435825 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || |||||||| || ||| || || ||||| | ||||| Sbjct 32435826 ATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTC 32435885 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 32435886 CCCGTTAGGGTTTTGACGAAGATCTGCAT 32435914 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || | ||||| || || || || ||||| || || |||||||||||||| || Sbjct 11148675 AACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGAGTTCTCCCATCCTC 11148616 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || || || | | || ||||||||||| || || || ||||| || Sbjct 11148615 CAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTG 11148556 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||| || || ||||||||||| || || || || || | || | ||||| Sbjct 11148555 GATCTTTGCCTTCACATTATCAATGGTGTCTGAGCTATCAACCTCCAACGTTATTGTCTT 11148496 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || || || | ||||| Sbjct 11148495 TCCAGTCAAGGTCTTCACAAATATCTGCAT 11148466 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| || || ||||| || || || || || | || ||||| ||||| Sbjct 11147984 TGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGT 11147925 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||||| |||||| || ||||| || ||||| |||||||| || || Sbjct 11147924 TTGCCAGCAAAGATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTC 11147865 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || || || || || || | ||| | ||||||||||| Sbjct 11147864 GCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCTGTG 11147805 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 11147804 AGTGTCTTGACAAAGATTTGCAT 11147782 Score = 116 bits (128), Expect = 8e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||| Sbjct 8434233 CTAAGCCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGGATGTTATAATCAGCAAGCGTT 8434174 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| || |||||||| || || || | | || || || ||||| |||||| Sbjct 8434173 CGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGGATGCCT 8434114 Query 195040 TCTTTGTCTTGAAT 195053 ||||| || || || Sbjct 8434113 TCTTTATCCTGGAT 8434100 >seq3 Length=36364294 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 ||||||||||| || || || ||||||||||| ||| | ||||||| ||||||||| Sbjct 21340196 CTTCCAAAGAAGCATGGGAGAGGAGGACAATCAGCTCTTCGTTTTGCTCGACTTCGAATG 21340137 Query 125584 GAAAAGAGACACAACTATTTGAGGAA 125609 |||||| | ||||||||| ||||||| Sbjct 21340136 GAAAAGCGGCACAACTATGTGAGGAA 21340111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475473234577