Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq431 563 3e-156 >seq431 Length=160619 Score = 563 bits (624), Expect = 3e-156 Identities = 717/987 (73%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 578 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 637 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 638 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 697 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || |||||||||||| || || | || ||| Sbjct 698 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 757 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||| |||||||| |||||| ||| |||||| Sbjct 758 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 817 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 818 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 877 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 878 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 937 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 938 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 997 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 998 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 1057 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||| ||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct 1058 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1117 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || |||| || || | || || || | | || || ||||| || ||||||||||| Sbjct 1118 TTGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATGC 1177 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || ||||| || ||||| || | | | ||||||||||||| | || |||| ||| Sbjct 1178 AACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1237 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 | || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 1238 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1297 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 ||||||||| | | || ||||||||||| || || ||||| || || || || || Sbjct 1298 CCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGA 1357 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || | || ||| || || || || |||||||| || ||||||||||| | || || Sbjct 1358 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 1417 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 |||||| || || || || || ||||| || ||||| | ||| || | |||||| ||| Sbjct 1418 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1477 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 ||||||||| || | | || ||||| || ||||||||||| || | || || ||||| Sbjct 1478 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTT 1537 Query 6151 GTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || | ||||| |||||| Sbjct 1538 TTCAGTGCTGGTTATCCAGTTACAGAA 1564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648818720266