Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-20 >seq4 Length=31929104 Score = 113 bits (124), Expect = 5e-20 Identities = 238/351 (68%), Gaps = 17/351 (5%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || ||||| ||||| | ||||||||||| || || || || || || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||||||||| || ||| ||| |||||| || Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGC-GCAGAAACTTCCAGAGAA 2301936 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 |||||| ||||| || ||||| || | || ||| |||||||| |||| Sbjct 2301935 GAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC---- 2301880 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTC 37405 | |||||||| | ||| || || || ||| ||||| | |||||| Sbjct 2301879 --CGTCGATCCATTTCAACGCCCACTCGGCTTT---CTTAGCCACACACGGCACTGTTTC 2301825 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 | || | ||||| ||| ||||| | || | || ||||| |||| || | Sbjct 2301824 GACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAG 2301765 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||||||||| || ||||| |||||||| || || || || || ||||| || Sbjct 2301764 ACTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 2301714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313608893240