Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq431 558 4e-154 >seq431 Length=160619 Score = 558 bits (618), Expect = 4e-154 Identities = 702/961 (73%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 ||||| || || |||| ||||| || || ||||||| || || | ||| | |||||| Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 162979 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGA 163037 ||||| || || | |||||| | |||||||| || || || ||||| || || ||||| Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 163038 GCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 163097 || || |||| || || | || || ||||| || || |||||||| || |||| | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 163098 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 163157 ||| || || ||| | ||||| || || ||||||||||| ||||| ||||||| || Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 163158 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 163217 | | || || || ||||||| | || | || | |||||| | | || | | Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1239 Query 163218 ATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGT 163277 || ||||| ||||| ||||||||| | || | ||||||||||| |||||| ||| Sbjct 1238 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGT 1179 Query 163278 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 163337 ||||| || || ||||||||||| || |||| || ||| || ||||||| ||||||| Sbjct 1178 TGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCA 1119 Query 163338 AGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGT 163397 ||| ||| ||||| | ||||| || || |||||||| || ||||||| |||| |||| Sbjct 1118 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 1059 Query 163398 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGT 163457 ||||| || || ||||||||||| |||||||| || || ||||| || || |||||||| Sbjct 1058 ATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 999 Query 163458 CTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCG 163517 ||||| || || || ||| || |||||||| | || |||||| | || | Sbjct 998 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 939 Query 163518 TGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 163577 || || || |||| ||| || || | ||||||| || |||||||| ||||| || Sbjct 938 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 879 Query 163578 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163637 || || ||||| || || ||||| || || || || ||||||||||||||||| || Sbjct 878 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 819 Query 163638 CAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTT 163697 |||||| | | | ||||||||||| || || |||||||| || || |||||||| Sbjct 818 CAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 759 Query 163698 TACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 163757 || || | || | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 758 CACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 699 Query 163758 CATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGG 163817 | ||||| |||| |||||||| | || || ||||| || | ||||||| ||| Sbjct 698 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 639 Query 163818 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGC 163877 || |||||||||||||||||||| ||||| || || |||||||| || || || ||||| Sbjct 638 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 579 Query 163878 T 163878 | Sbjct 578 T 578 Score = 518 bits (574), Expect = 4e-142 Identities = 723/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || || |||||||| || ||||| || || | || || Sbjct 34765 GATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTT 34824 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 34825 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34884 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 || || ||||| | || ||||||| | ||||| ||| || || | || || || || Sbjct 34885 TATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCTTAACCGCCGCAGT 34943 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 34944 TTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACA 35003 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || || |||| || || ||||||||||| Sbjct 35004 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGG 35063 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 || |||| ||||| ||||| ||| | || || ||||| || || || ||| | | Sbjct 35064 CGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAAT- 35122 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | || ||||| ||||| || || ||||||||||| |||||||||||||| || |||| Sbjct 35123 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 35182 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || || ||||| ||||| || ||||||| || || || ||||| || ||||| | Sbjct 35183 TGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTA 35242 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | || | |||||||| || || ||||| | ||||| || |||| Sbjct 35243 TATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATA 35302 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| ||||| ||| | ||||| | || |||||| ||||||||||| | || | Sbjct 35303 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 35362 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | |||||||| |||| || ||||| || |||||||| || || ||| | | | Sbjct 35363 TGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 35422 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| | Sbjct 35423 CTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 35482 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | | Sbjct 35483 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 35542 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 165456 || | |||| || |||| | | ||||| ||||| ||||| ||||| || || | Sbjct 35543 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACT 35602 Query 165457 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 165516 |||| ||||| ||| | ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 35603 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 35662 Query 165517 ACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAA 165576 | || || || || || || | ||||||||| |||| || ||||| || ||||||| Sbjct 35663 ATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 35722 Query 165577 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 || |||| ||||| || || || | || | || ||||| ||||||| Sbjct 35723 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563206565708280