Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 1e-11 >seq4 Length=31929104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 177/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 25478 TATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGG 25537 ||||||| ||||||||||| || || ||| ||||||||||| || | ||||| Sbjct 2301502 TATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAGGAAGTCGATCTCT 2301561 Query 25538 CCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACG 25597 | ||| | | |||| | |||| || | | ||| | || || ||| ||| Sbjct 2301562 CGTCGGATCTACGCCACTGGGAAACTCTTACCGATGGCGAACGCCACTTCATCACTCACG 2301621 Query 25598 TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCA 25657 | | || ||||| |||||||| ||||| || || ||| ||||| || | |||| Sbjct 2301622 TCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGTTCGGTTCA 2301681 Query 25658 CCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATCGAA 25716 | |||||| || || ||||| ||| ||||| || ||||| || ||||||||| Sbjct 2301682 TGAAGGAAGTCCAAATCGCCGAGGCTC-GTGCGTTCTATGGCTTCCAAATCGCCATCGAA 2301740 Query 25717 AATGTGCACTCTGAGGTGTAT 25737 ||| | ||||| ||| ||||| Sbjct 2301741 AATATCCACTCCGAGATGTAT 2301761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839795848640