Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq7 82.4 6e-11 >seq5 Length=39371879 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || || ||||| || ||| || |||| ||| Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| || || || || ||| | ||| |||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || ||||||||||| || || |||||||| ||| | ||| | || |||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| ||||| ||||| || ||| Sbjct 2688249 CATTCAGAAAGAGTCTACCCTCCAC 2688225 >seq7 Length=21614486 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | || ||||| |||||| | || ||||| |||||||| | ||| Sbjct 12547888 GACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAA 12547947 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||||||||| ||||| || || ||||| ||| |||| || Sbjct 12547948 GATGGTTGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTTG 12548007 Query 28767 AGATTACGAGGAGGGATAATAAT 28789 || | | ||||| || || || Sbjct 12548008 AGGCTTAGGGGAGGAATTATGAT 12548030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402565428349