Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq431 547 2e-151 >seq431 Length=160619 Score = 547 bits (606), Expect = 2e-151 Identities = 721/991 (73%), Gaps = 14/991 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 581 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 640 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 641 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 698 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || |||||||||||| || || | || ||| Sbjct 699 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 757 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| | |||||| |||| | | |||||| Sbjct 758 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 817 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 818 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 877 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 878 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 937 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 938 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 994 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| || || || ||||||||||| |||||||| || || Sbjct 995 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTG 1054 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | |||||| ||||||||||| || || ||||||||||||||||| ||||| Sbjct 1055 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1114 Query 18368 CCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAAT 18426 ||||| || | ||||| | | ||||| || | | |||||||| || || || |||| Sbjct 1115 TCCTTGACCGATTGGATAGATCAAGAAA-ACAGCGGCAGCAGCTGCAACAGGAGCTGAAT 1173 Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486 | |||||| ||||| ||||||||||| || | ||||||||||||| | || |||| Sbjct 1174 ATGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 1233 Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546 ||||| || | || | | ||||| | ||||| || | ||| || || || || | Sbjct 1234 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 1293 Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606 ||||||| || || | | ||| ||||||||||| ||||| ||||| | ||| || || Sbjct 1294 ATAACCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTG 1353 Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666 ||| | || | || || || || || || |||||||| || |||| | ||| || | Sbjct 1354 CAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAA 1413 Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726 |||| |||||||||||||| || || || ||||||||||||| || ||||| | |||| Sbjct 1414 CAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATA 1473 Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786 | | || |||||| || | | ||||||||| | || |||||||| || | ||| || | Sbjct 1474 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGAC 1533 Query 18787 GGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||| | || || || | ||||| ||| || Sbjct 1534 GGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317625533514