Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq431 578 5e-160 >seq431 Length=160619 Score = 578 bits (640), Expect = 5e-160 Identities = 705/964 (73%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 578 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 637 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||| | || || |||||||| || | |||||||| |||| ||||| | Sbjct 638 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 697 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || |||||||| ||||| ||||||| ||| | ||||| Sbjct 698 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 757 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||||||||||||||| || | || ||||| Sbjct 758 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 817 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || |||||||||||||| || || || ||||||||||| |||||||| || || Sbjct 818 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 877 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| | || ||||||| |||| || || || Sbjct 878 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 937 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||||||||||| || || || |||| Sbjct 938 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 996 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| ||||| | |||||| || |||||||| || ||||| ||||| || |||| Sbjct 997 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGA 1056 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | |||| ||||||| || || || || || | ||||||| |||| || || | Sbjct 1057 ATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTC 1116 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||| | || |||| |||||| || |||| ||||| ||||||||||| || |||| Sbjct 1117 CTTGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATG 1176 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| |||||| |||||||| ||||||||| | | |||||||||||| ||||| | Sbjct 1177 CAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1236 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | |||||| | || | || | ||||||| || || || | Sbjct 1237 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1296 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||| ||||||| |||||| |||||||| || || || ||||| | ||| || || || Sbjct 1297 ACCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGC--TGC 1354 Query 103950 AGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || || |||| || |||||||| || || ||||| ||||| | || || |||| || Sbjct 1355 AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 1414 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 ||||||||||| || || ||||| || ||||| || || | ||| |||| || || | Sbjct 1415 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 1474 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 ||| ||||| | ||| | || |||||||||| ||||| ||||| || | || |||| Sbjct 1475 AGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGAC 1533 Query 104127 GGTT 104130 |||| Sbjct 1534 GGTT 1537 Score = 554 bits (614), Expect = 6e-153 Identities = 733/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 35765 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 35706 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 35705 TGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 35646 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 35645 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 35586 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 35585 TTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 35526 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 35525 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 35466 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 35465 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 35406 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || ||||| || |||| || || Sbjct 35405 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACGGTAGCACCATGAATA 35346 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| |||||||| | Sbjct 35345 GCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAAT 35286 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| ||||| |||||||| Sbjct 35285 GTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAA 35226 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 ||||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 35225 CTGGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 35166 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | || Sbjct 35165 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGCGCA 35106 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || || | || || ||||||||||| ||||| Sbjct 35105 AGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAAT 35046 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 35045 GTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 34986 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || || || || | |||| Sbjct 34985 AGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTTAAGAAA 34926 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | || || |||||||| ||||| |||| || Sbjct 34925 TT-GCAGCCTTCCAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 34867 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || |||| ||| ||||| | |||| ||| ||| ||||| || | ||| || || Sbjct 34866 TGTACCTGTAAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGGCCGGA 34807 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 34806 CCAACCTACAAAAACGAAACGGTCCCTACGTAACCAGTCATCCATAATATCAAA 34753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510186945480