Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq431 533 2e-146 seq9 111 2e-19 >seq431 Length=160619 Score = 533 bits (590), Expect = 2e-146 Identities = 710/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 582 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 641 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || | | || | | |||||| || ||| Sbjct 642 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 701 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| |||| ||||| | || ||| ||| Sbjct 702 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAAC 761 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || || ||||| || | |||||||||||||| | | | || |||||||| Sbjct 762 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 821 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 822 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 881 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| | || || || | ||||| ||||| ||| Sbjct 882 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 941 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 942 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1001 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || || ||||| || ||||| || || || ||||| || Sbjct 1002 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACA 1061 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 1062 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1121 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | ||| || | ||||| |||||| ||||| | || || |||||||| |||||| Sbjct 1122 CCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATGCAACA 1181 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 ||||||||| ||||| || | | | | |||||||||| | |||||||| Sbjct 1182 GCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1241 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| ||||| || |||||| Sbjct 1242 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 1301 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||||| ||| ||||||||||| ||||| ||||| | || ||||| || | Sbjct 1302 TCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 1361 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| || || ||||| || || | | ||| || | || ||||| Sbjct 1362 GGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 1421 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || ||||| || ||||| || ||||| || |||| || || ||| | | Sbjct 1422 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGT 1480 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | |||| || ||||| | |||||||||||| || | |||| | ||| | Sbjct 1481 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 1540 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 1541 AGTGCTGGTTATCCAGTTACAGAA 1564 Score = 372 bits (412), Expect = 4e-98 Identities = 705/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 35769 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 35710 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || || || || | |||||| || || || ||||| Sbjct 35709 ATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 35650 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 35649 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 35590 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || ||||| || | || | || |||| | ||| | || || || Sbjct 35589 TAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 35530 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 35529 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 35470 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 35469 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 35410 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 35409 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 35371 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | ||| || ||||||||||| || ||||| | || | || | || || ||||| Sbjct 35370 ATTTTCCACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAAC 35311 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 35310 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAA 35251 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| ||||| || || || |||||||||| ||||||||||| Sbjct 35250 TCGAAATATAGCTGCTACACCAAAACTGGGCGCAAAGAACCAACCAGATTGACCTAGTGG 35191 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || | |||||||||||| ||| || || Sbjct 35190 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 35131 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| ||||| Sbjct 35130 AGGTCGCAATTGAACAGATCGCGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCC 35071 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 35070 GAAAGCGCCGTGGAGAGCAACAAATGTCCACAGACCGCCTAATTGACACCAACGAGTAAA 35011 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 35010 ATCTCCTTGTGCTTCAGGACCCCATAGTAACAACAAAGAATGTGCTAAACTATTAGCAGG 34951 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || |||||||| || || || | ||| ||| || | ||||| Sbjct 34950 AGTAGAAACTGCGGCGGTTAAGAAATTGCAGCCTTCCAAATAGGAACTGGCCAATCCATG 34891 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| |||||||| || | | | ||| || Sbjct 34890 AGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAAGCGAAATAGGC 34831 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || || || ||||| |||| || || ||||| || || |||||| Sbjct 34830 ACAAGGAAAGAGCAATAGGCCGGACCAACCTACAAAAACGAAACGGTCCCTACGTAACCA 34771 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 34770 GTCATCCATAATATCAAA 34753 >seq9 Length=38630433 Score = 111 bits (122), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| ||||||||||||||||| || |||||||| || | |||||| ||||| || |||| Sbjct 2730047 CTTGAGCTGTGCAGATGTTACTAGTAGCTTTGTCCCTGCGAATATGTTGCTCCCTGGTTT 2730106 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCT 139432 | | ||| | | | ||||| || ||| || |||| || ||| | ||||| Sbjct 2730107 GCATTGCCATACGCAAAGCAGGCTTCCCTGAAGAATCAACACTAAC--ACCGATAATTCG 2730164 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 || || ||| |||||||||| | | || || || ||||||||||||||||| || Sbjct 2730165 CCCTGGCATCAACCTCTTATACTCTTGGGAAGTAGCCAAAAATGCAGCATGAGGACCACC 2730224 Query 139493 GTATCCCATAGGAATACCAAACCTTTG 139519 || ||||| || | |||||||| || Sbjct 2730225 ATACCCCATCGGCACCCCAAACCTCTG 2730251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || ||||||||||| || | |||||| || ||||||||||| Sbjct 2727498 AAATGGTGCCAAATGCTTCTTGACACCAATAGGTCCCATGCCAGGTCCACCACCTCCATG 2727557 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 |||||| |||||||| || || | ||||||||| || ||||| || ||| Sbjct 2727558 TGGAATGCAGAATGTTTTGTGGAGATTTAGATGGCAAACATCAGCTCCA 2727606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995280646120