Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq431 598 6e-166 >seq431 Length=160619 Score = 598 bits (662), Expect = 6e-166 Identities = 727/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || ||||| || || | ||| || || || || | ||||| Sbjct 578 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 637 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 ||||||||| | || || ||||| || || | |||||||| || ||||| || Sbjct 638 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 697 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || || ||||||||||| ||| | ||| | ||||| Sbjct 698 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 757 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||||||| || || || ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 758 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 817 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| |||||||||||||||||| || || || || ||||| || || ||||| || || Sbjct 818 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 877 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||||||||| | ||||| | || || ||| |||| || || || Sbjct 878 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 937 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 938 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 997 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| || || | |||||| || |||||||||||||| |||||||| |||||||| Sbjct 998 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 1057 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| |||| |||| |||||||||||||| || ||||||||| |||| || ||| || Sbjct 1058 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1117 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||||| ||||||| | ||| || || ||||| || || ||||| |||||||| Sbjct 1118 TTGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATGC 1177 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| |||||| || |||||||| | ||| | |||||||||||||| ||||| || Sbjct 1178 AACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1237 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | ||||||| || || || || Sbjct 1238 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1297 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||| ||||| | ||||| ||||||||||| ||||| ||||| | ||| || || || Sbjct 1298 CCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGA 1357 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || ||||||||||| || ||||| || || | || || |||| ||| || Sbjct 1358 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 1417 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 |||||||||||| |||||||| || || || || || ||||| || | ||| || |||| Sbjct 1418 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1477 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| ||||| || | || | ||||| Sbjct 1478 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 1536 Query 27689 TGTTAGTTGATGTCACCCACTCACAGAA 27716 | | ||| || | ||| | |||||| Sbjct 1537 TTTCAGTGCTGGTTATCCAGTTACAGAA 1564 Score = 517 bits (572), Expect = 1e-141 Identities = 731/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 35770 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 35711 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 35710 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 35651 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || || || || || ||||| |||| Sbjct 35650 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 35591 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || ||||| || || | | |||| || | | ||| | ||| | || || | Sbjct 35590 GTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 35531 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 35530 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 35471 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 35470 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 35411 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || || ||| | |||| Sbjct 35410 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACGGTAGCACCAT 35351 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | |||| || ||| ||||||||||||||||| || |||| Sbjct 35350 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 35291 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || || || |||| Sbjct 35290 TCAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 35231 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || || | ||||| || ||||||||||| | Sbjct 35230 CAAAACTGGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATCAGGAATACAGAAA 35171 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| |||||||| || || || ||||| || || || | | || ||| Sbjct 35170 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGAT 35112 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| ||| | || || |||||||||||| Sbjct 35111 CGCGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCA 35052 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 35051 ACAAATGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 34992 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-T 24223 ||||| |||| | | |||||| | | | | |||||| || || || || || | | Sbjct 34991 CCCCATAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTT 34932 Query 24224 AAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAA 24282 |||||| | ||| || || | ||||||||| || | |||||| || ||||| || | Sbjct 34931 AAGAAA--TTGCAGCCTTCCAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTA 34874 Query 24283 CAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGA 24342 |||| | ||| || |||| |||||| || | || | ||| ||| |||| || | | Sbjct 34873 CAAAGGTTGTACCTGTAAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATA 34814 Query 24343 GTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAA 24402 | || |||||||| ||||| || || || |||| | |||||| |||| || |||| Sbjct 34813 GGCCGGACCAACCTACAAAAACGAAACGGTCCCTACGTAACCAGTCATCCATAATATCAA 34754 Query 24403 A 24403 | Sbjct 34753 A 34753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665490814648920