Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 seq2 105 8e-18 seq1 105 8e-18 seq8 87.8 2e-12 >seq4 Length=31929104 Score = 105 bits (116), Expect = 8e-18 Identities = 189/271 (70%), Gaps = 9/271 (3%) Strand=Plus/Plus Query 64949 TTGACAAATACATTAAGGA-TGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 |||| | ||||| ||||| | | | |||||||| | | | || | ||| || |||| Sbjct 2301772 TTGAAACTTACATCAAGGACTCCAAC-GAAAAGAACCGGCTCTTCCACGCCGTCGAAACA 2301830 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 || || ||| | | ||||| || | ||||| |||||||| | ||| || ||| Sbjct 2301831 GTGCCGTGTGTGGCTAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACG----GT-TCGG 2301885 Query 65068 T--CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 | |||||||| || || | || ||||| || ||||| || || |||||||| || Sbjct 2301886 AAACTTTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAA 2301945 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 ||||||||||| | |||||| || ||||| || | ||||| || || ||||| | Sbjct 2301946 GTTTCTGCGCTATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGA 2302005 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 | || | || || |||||||| |||||||| Sbjct 2302006 ACGAGTTAATCTCACGAGATGAAGGTCTCCA 2302036 >seq2 Length=41236440 Score = 105 bits (116), Expect = 8e-18 Identities = 276/419 (66%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| ||||||| || || ||| | || ||||||| | || | ||| || ||||| Sbjct 18386459 GAGGTTGTGGAGTTCCTAAAGAAGCCAGAGAGATTTACTGCAGTTGGGGCTCGCATCCCT 18386518 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | || || || || |||||||| || || ||| || || Sbjct 18386519 AAAGGTGTTCTTCTTGTTGGCCCTCCTGGAACTGGAAAGACTCTTCTGGCCAAGGCAATT 18386578 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| |||||| || || | || | | | ||||| || |||| Sbjct 18386579 GCTGGTGAAGCTGGTGTGCCATTCTTCTCCATT--TCAGGTTCTGAGTTTGTTGAAATGT 18386636 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | ||||| |||||||| | | ||| || ||| | Sbjct 18386637 TTGTTGGTGTTGGCGCCTCTCGAGTTCGTGATCTCTTCAAGAAGGCCAAGGAGAATGCCC 18386696 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | ||||||||||| | ||||| |||||||| || || |||| | | ||||| | Sbjct 18386697 CCTGTATTGTCTTTGTGGATGAAATTGATGCTGTTGGACGGCAAAGAGGAACTGGTATTG 18386756 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 | || || || || || || || |||| || || | || || |||||||| | Sbjct 18386757 GTGGTGGGAACGATGAAAGGGAGCAGACTCTTAACCAGCTTTTGACTGAAATGGATGGTT 18386816 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||| | | || || || | || || || || ||||| || | ||||| |||||| Sbjct 18386817 TTGAGGGTAACACAGGTATCATTGTAATAGCAGCAACTAACCGGGCAGATATTCTTGAT 18386875 >seq1 Length=37323695 Score = 105 bits (116), Expect = 8e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||||||||| | ||||||||||||| | ||| |||| || Sbjct 6395636 CGGGACTTTGACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCCTACCTCTTGAAA 6395577 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | || |||| || || ||||||| ||| |||| || | || | Sbjct 6395576 GT-TCAAGGGAAGGTT-ATAGAAAGGCCTCAACACATGTTAATGAGGGTTGCTGTTGGAA 6395519 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | || ||| ||||||||||||| | | || || ||| |||||| ||| | || Sbjct 6395518 TTCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGT 6395459 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| || | ||||| || ||||||||||| |||||||| || || Sbjct 6395458 TCACTCATGCTTCTCCAACACTTTTCAATGCTGGAACACCAAGGCCTCA 6395410 >seq8 Length=19593398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | || || ||| | || || || Sbjct 2546166 CCTGGTACTGGAAAGACGCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTGCCGTTT 2546225 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || || | ||||||||| |||| ||||| || ||||| || || Sbjct 2546226 TTCTCATGCGCAGCTTCAGAGTTTGTGGAGCTGTTCGTTGGAGTAGGTGCGTCCAGAGTA 2546285 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | || || | || |||||| | ||||| || || ||||| |||| Sbjct 2546286 AGGGATTTATTCGAGAAGGC-----AAAATCGAAGGCGCCATGCATCGTATTCATAGATG 2546340 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||||| || || | || | | |||||| | || |||||| ||||||| Sbjct 2546341 AGATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAG 2546400 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 | || ||||| ||||| | | || ||||||||||| ||| Sbjct 2546401 AGCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT 2546441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566385981280