Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq431 536 1e-147 >seq431 Length=160619 Score = 536 bits (594), Expect = 1e-147 Identities = 708/977 (72%), Gaps = 6/977 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 582 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 641 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 642 GCACGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAG 699 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || ||||| || ||||| |||| |||||| | || || | Sbjct 700 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGA 759 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-A 8127 |||| | || || || || | | ||| ||||||||||| | | | | ||||| | Sbjct 760 ACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGA 819 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | ||||| |||||||| |||| ||||| || ||||||||||| || |||||||| Sbjct 820 AACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAA 878 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| |||||||| || | ||||| | || ||| || | ||| || || || Sbjct 879 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 938 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || || ||||| Sbjct 939 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 998 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || || |||||||| ||||| || || || |||||| Sbjct 999 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAAT 1058 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||||||||| || |||||||| || ||||||||||| |||||||| || || Sbjct 1059 ACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1118 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||| | |||||| | ||||| || ||| |||||| | || ||||| |||||| Sbjct 1119 TGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATGCA 1178 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| |||||| || | |||||| | ||| | | ||||||| | |||||||||| Sbjct 1179 ACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1238 Query 8548 GCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607 || | |||| | |||||| | | || | || ||| ||||| || || || ||| Sbjct 1239 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 1298 Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667 || ||||| | | || |||||||| || || || ||||| || || ||||| ||| Sbjct 1299 CATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAA 1358 Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727 | |||| | |||||||| || || |||||||| || | | || || | ||||||| Sbjct 1359 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGT 1418 Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787 ||||||||||| || ||||| || || ||||||||||| || || | ||||| || | Sbjct 1419 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAA 1478 Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTG 8847 | || | || ||| ||| ||||| | ||| |||||||| |||| ||||| | ||| Sbjct 1479 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTT 1538 Query 8848 TTTGTACTTGTAACCCA 8864 | || || || | ||| Sbjct 1539 TCAGTGCTGGTTATCCA 1555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615859082041320