Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq431 618 5e-172 >seq431 Length=160619 Score = 618 bits (684), Expect = 5e-172 Identities = 730/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 578 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 637 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| || || ||||| ||| ||| || || |||| ||||| Sbjct 638 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 694 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 695 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGC 754 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||||| | || ||||| | ||||| ||||||||||| | | | || || Sbjct 755 GGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATT 814 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || ||||||||||| || || || Sbjct 815 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 874 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 875 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 934 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || || || || Sbjct 935 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 994 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||||||||||||||||||||| || || || Sbjct 995 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTG 1054 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| ||||||||||| || || |||||||| | ||||| ||| Sbjct 1055 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1114 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||||| ||||||| |||||| |||||| || || | || ||||| || || Sbjct 1115 TCCTTGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATA 1174 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| ||||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1175 TGCAACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1234 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | || | |||| || ||||| || Sbjct 1235 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1294 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | || ||| ||||||||||| || || ||||| | ||| || || Sbjct 1295 TAACCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGC 1354 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||||||||| || ||||| ||||| | || || || | ||| Sbjct 1355 AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 1414 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 1415 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 1474 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | ||| ||| |||||||| ||||| ||||| || | || | || Sbjct 1475 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACG 1534 Query 68315 ATTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| | ||||||||| Sbjct 1535 GTTTTCAGTGCTGGTTATCCAGTTACA 1561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566944145571960