Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq431 715 0.0 >seq431 Length=160619 Score = 715 bits (792), Expect = 0.0 Identities = 743/969 (77%), Gaps = 4/969 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 578 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 637 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| ||||| | || || ||||||||| | || ||| |||||||| | Sbjct 638 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 697 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| |||||||| ||||| ||||||| ||| | || || Sbjct 698 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 757 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||||||||| || |||||||| ||||| ||||||||||| | ||||| || ||||| Sbjct 758 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 817 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||||| || || || || ||||| ||||| || || || || Sbjct 818 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 877 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||||||||| ||||||| | || || ||| |||| |||||||| Sbjct 878 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 937 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 938 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 997 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| ||||| | ||| || || |||||||| ||||||||||| || || ||||| Sbjct 998 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAA 1057 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | |||| |||||||||||||||| || || |||||||| | ||||| || || Sbjct 1058 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1117 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||||| ||||||| || ||| || |||| || ||||||||||| || || ||||| Sbjct 1118 TTGACCGATTGGATAGATCAAGAAAACAGCGGCAGCAGCTGCAACAGGAGCTGAATATGC 1177 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||| |||||||| ||||| | ||||||||| ||||| |||||||| Sbjct 1178 AACAGCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1237 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | |||||| | | | || | ||||||| |||||||| || Sbjct 1238 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1297 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||| ||||||| | ||| |||||||| || || |||||||| | ||| || || || Sbjct 1298 CCATTCATCAACAGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGA 1357 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | |||||| || ||||||||||| || ||||| || || || || || |||| |||||| Sbjct 1358 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 1417 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 ||||||||||||||| || || || || |||||||| |||||||| | || || ||||| Sbjct 1418 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1477 Query 68738 TGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGG 68796 ||||| | ||| || ||||||||||||| || || ||||| || | |||||| ||| Sbjct 1478 -AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG 1535 Query 68797 TTCTCTGTG 68805 || || ||| Sbjct 1536 TTTTCAGTG 1544 Score = 596 bits (660), Expect = 2e-165 Identities = 740/1008 (73%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 35770 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 35711 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 35710 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 35651 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 35650 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 35591 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 35590 GTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 35531 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 35530 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 35471 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 35470 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 35411 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| || || ||| |||||| Sbjct 35410 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACGGTAGCACCAT 35351 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 35350 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 35291 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| |||||||| | ||||| | ||||||||| || |||| || | Sbjct 35290 TCAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 35231 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| |||||||| || || || || || || ||| || Sbjct 35230 CAAAACTGGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATCAGGAATACAGAAA 35171 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 35170 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 35112 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| ||||| ||||||| |||||||| || Sbjct 35111 CGCGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCA 35052 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 ||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 35051 ACAAATGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 34992 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 34991 CCCCATAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTT 34932 Query 67425 AGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | ||||| ||| || || | ||| | || | ||| ||||| ||||| || || Sbjct 34931 AAGAAATT-GCAGCCTTCCAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTAC 34873 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 ||| || ||||| |||| ||| || || | || | ||| ||| ||||| || | ||| Sbjct 34872 AAAGGTTGTACCTGTAAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAG 34813 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || |||||||| ||||| || || || || | | ||||||||| Sbjct 34812 GCCGGACCAACCTACAAAAACGAAACGGTCCCTACGTAACCAGTCATC 34765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || |||| || |||||||| ||||||||||||| || ||||||| ||| || Sbjct 114489 AATCAAAT--CTCCTCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 114546 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| |||||||||||||||||| Sbjct 114547 TCTACCGCTGAGCTACTGAGGA 114568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || |||| || |||||||| ||||||||||||| || ||||||| ||| || Sbjct 135464 AATCAAAT--CTCCTCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 135407 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| |||||||||||||||||| Sbjct 135406 TCTACCGCTGAGCTACTGAGGA 135385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572051318056920