Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 136 7e-27 seq7 113 8e-20 >seq1 Length=37323695 Score = 136 bits (150), Expect = 7e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| ||| | || | ||| || |||||| Sbjct 11147789 ATTTGCATACCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTA 11147730 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || |||| | ||| || | ||||| || |||||||| | || || || Sbjct 11147729 TAGTCAGCTAGGGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGG 11147670 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| |||||||| || ||||| || || | || | ||| ||||||||| || Sbjct 11147669 TCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAG 11147610 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 |||||| || || || || || || |||||||| ||||| ||||| |||||||| | Sbjct 11147609 CTCTCAACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCATCTGG 11147550 Query 193365 TTAGTAAAATAATTA 193379 | || ||| ||||| Sbjct 11147549 TAGGTCAAAGAATTA 11147535 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||| | ||||| |||| ||| | || | ||| || |||||| Sbjct 11148017 ATTTGCATGCCACCTCGAAGACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTA 11147958 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | | || || | ||||| || ||||| || | ||| |||||| Sbjct 11147957 TAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGA 11147898 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| |||||||| || ||||| || || | ||| | ||| ||||||||| || Sbjct 11147897 TCAGGAGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAG 11147838 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | || ||||| || ||||| || || || ||||| |||||||| Sbjct 11147837 CTCTCAACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 11147782 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| || | || | ||| || ||| || Sbjct 11148246 AATTTGCATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 11148187 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | | || || ||| || | ||||||||| |||||||| || ||||| || Sbjct 11148186 ATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTG 11148127 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || || |||||||| || || || | || | ||| |||||| || || Sbjct 11148126 ATCTGGTGGGATACCCTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTGTCCGA 11148067 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | ||| || ||||||||||| || || || ||||| |||||||| Sbjct 11148066 GCTCTCTACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 >seq7 Length=21614486 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||| || | || | ||| || ||||| || || Sbjct 2883013 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2883072 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || ||| || || ||||| |||||||| || | ||||||||||| ||| Sbjct 2883073 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2883132 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | ||||| ||| ||| ||||| ||| |||| Sbjct 2883133 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2883192 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || ||||| || || || || || || ||||| |||||||| Sbjct 2883193 ACTTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||| || | || | ||| || ||||| || || Sbjct 2896003 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2896062 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || ||| || || ||||| |||||||| || | ||||||||||| ||| Sbjct 2896063 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2896122 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | ||||| ||| ||| ||||| ||| |||| Sbjct 2896123 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2896182 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 2896183 ACTTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||| | |||| ||| | || | ||| || ||| || Sbjct 2883234 AATTTGCATGCCACCACGGAGTCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTT 2883293 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| ||| || | |||||||| ||||||||||| ||||| || Sbjct 2883294 ATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTG 2883353 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || |||| || | ||| || ||||| || Sbjct 2883354 GTCTGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGA 2883413 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 2883414 ACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2883470 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || | |||| ||| | || | ||| || ||| || Sbjct 2896224 AATTTGCATGCCACCACGAAGCCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTT 2896283 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| ||| || | |||||||||||||||||||| ||||| || Sbjct 2896284 ATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTG 2896343 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || |||| || | ||| || ||||| || Sbjct 2896344 GTCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGA 2896403 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 2896404 ACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649553111920