Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 2e-14 seq9 87.8 3e-12 seq6 86.0 9e-12 seq4 86.0 9e-12 seq1 86.0 9e-12 >seq5 Length=39371879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| || ||||| || || | |||||||| ||| Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || ||||||||||| ||||| || ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||||| || ||||| || || | | ||||| | ||||||| Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATA-- 2688707 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 ||||||||| ||| |||| || || Sbjct 2688706 ATATCCAAAAGGAGTCGACTCTCCA 2688682 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || |||||||||||||| || || || || || ||| ||| Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || || || || || ||||| ||||| || || ||||| || Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | || | |||||| ||||| | || ||| || |||||| | |||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 2688249 CATTCAGAAAGAGTCTACCCTCCA 2688226 >seq9 Length=38630433 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| ||||| || ||||||||||| | || || || ||| Sbjct 27803492 ATGCAGATTTTCGTTAAAACCTTGACCGGGAAAACTATTACTCTGGAGGTAGAGAGTTCG 27803551 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| || ||||| ||||| || ||||| || || Sbjct 27803552 GATACAATTGATAACGTCAAGGCAAAAATCCAGGATAAGGAAGGGATCCCTCCGGATCAG 27803611 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| |||||| | || || ||| || | | ||||| || Sbjct 27803612 CAGAGGTTGATATTCGCCGGGAAGCAGTTGGAGGACGGCAGGACCCTTGCGGATTACAAC 27803671 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 27803672 ATCCAGAAGGAGTCCACTCTTCA 27803694 >seq6 Length=26303135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||| || || || || || | ||||||||| || Sbjct 25054105 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATAACCCTGGAAGTCGAAAGCTCC 25054164 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || || || ||||| || || ||||| || Sbjct 25054165 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCAGACCAG 25054224 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||||||||| || ||||||| | |||||||| Sbjct 25054225 CAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 25054284 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || |||||| |||| |||||||| || || || Sbjct 25054285 ATTCAGAAAGAGTCGACACTTCATTTGGTTTTGAG 25054319 >seq4 Length=31929104 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || || ||||| || | ||||||||||| || ||||| ||||| || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | ||||||| ||||||||| | |||||| | ||| ||| Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAG 2301935 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || || ||||| || || || |||| | ||| || ||| Sbjct 2301934 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAA 2301890 >seq1 Length=37323695 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||| || || || || || || || || Sbjct 11148466 ATGCAGATATTTGTGAAGACCTTGACTGGAAAGACAATAACGTTGGAGGTTGATAGCTCA 11148525 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || || || || || || |||||||| || Sbjct 11148526 GACACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGGATCCCTCCAGACCAG 11148585 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| || ||| |||||| | |||| || || Sbjct 11148586 CAGAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGGAGAACTCTGGCAGACTACAAC 11148645 Query 156003 AT 156004 || Sbjct 11148646 AT 11148647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868057039600