Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq1 109 1e-18 seq6 96.9 7e-15 seq9 87.8 4e-12 >seq7 Length=21614486 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| ||||| || | || | || | || | ||| || |||||| |||||| Sbjct 2883469 ATGCCACCCCTAAGTCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCA 2883528 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||||||||||||||| | |||||||| || ||| Sbjct 2883529 GCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGT 2883588 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| |||| || || ||| Sbjct 2883589 GGGATCCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCC 2883648 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 2883649 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2883698 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | || | ||| || |||||| |||||| Sbjct 2896459 ATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCA 2896518 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||||||||||||||| | |||||||| || ||| Sbjct 2896519 GCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGT 2896578 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||| |||||| |||| || || ||| Sbjct 2896579 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCC 2896638 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 2896639 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2896688 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| || || || ||||| | || | ||| || ||| ||||| || Sbjct 2895775 ATCCCTCCTCTAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 2895834 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | || || |||||||| || || |||||||| |||||| Sbjct 2895835 GCAAGTGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGT 2895894 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| ||||| || | || || || Sbjct 2895895 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCC 2895954 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| |||||||||||||| || ||||| | ||| ||||||||| Sbjct 2895955 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2896005 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || || || ||||| | || | ||| || ||| ||||| || Sbjct 2882785 ATCCCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 2882844 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | || || |||||||| || || |||||||| |||||| Sbjct 2882845 GCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGT 2882904 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| || || || | || || || Sbjct 2882905 GGGATACCCTCCTTATCTTGGATCTTGGCTTTAACGTTGTCAATTGTGTCAGAGCTCTCC 2882964 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| |||||||||||||| || ||||| | ||| ||||||||| Sbjct 2882965 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2883015 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| | || || |||| ||||| || |||||||||||||| || || Sbjct 2895594 GATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATCAACCT 2895653 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || || || || || || || || ||| ||||| || | Sbjct 2895654 CTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATTGT 2895713 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || |||||||| ||||| ||||| || | ||||||||| Sbjct 2895714 GTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAATGTCTTGACAAATATCTG 2895773 Query 192534 CAT 192536 ||| Sbjct 2895774 CAT 2895776 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| | || || |||| ||||| || || ||||||||||| || || Sbjct 2882604 GATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAACCT 2882663 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || || || || || || || || ||| ||||| || | Sbjct 2882664 CTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGT 2882723 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || |||||||| ||||| || || || | ||||||||| Sbjct 2882724 GTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACAAATATCTG 2882783 Query 192534 CAT 192536 ||| Sbjct 2882784 CAT 2882786 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || || || ||||| | || | ||| || || ||||| || Sbjct 2883241 ATGCCACCACGGAGTCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 2883300 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| |||| || | ||||| |||||||| ||||| ||||| || || ||| Sbjct 2883301 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGT 2883360 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | ||| || || Sbjct 2883361 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2883420 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| | ||||| | |||||||||||| Sbjct 2883421 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2883470 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | ||| || |||||| ||||| Sbjct 2896003 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2896062 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| ||||| ||||| || ||||| || | ||||||||||| || Sbjct 2896063 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2896122 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||||||||| || | ||| || || Sbjct 2896123 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2896182 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| | ||||| | ||| || ||||| Sbjct 2896183 ACTTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || || || ||||| | || | ||| || || ||||| || Sbjct 2896231 ATGCCACCACGAAGCCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 2896290 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| |||| || | ||||| || ||||| ||||| ||||| || || ||| Sbjct 2896291 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGT 2896350 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | ||| || || Sbjct 2896351 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2896410 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| | ||||| | |||||||||||| Sbjct 2896411 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | ||| || |||||| ||||| Sbjct 2883013 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2883072 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| ||||| ||||| || ||||| || | ||||||||||| || Sbjct 2883073 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2883132 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||||||||| || | ||| || || Sbjct 2883133 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2883192 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| | || || | ||| || ||||| Sbjct 2883193 ACTTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 >seq1 Length=37323695 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| |||||| | || ||||| | || | ||| || ||||||||| ||| Sbjct 11148011 ATGCCACCTCGAAGACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTCA 11147952 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | ||||| ||||||||||| | ||| ||||||||||| Sbjct 11147951 GCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGGA 11147892 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| ||||| |||| ||| || || Sbjct 11147891 GGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCTCTCA 11147832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || || || | ||| || | ||| || ||||| Sbjct 11147831 ACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 11147782 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||||| | ||||| |||| |||| ||| ||||||||||| || || || Sbjct 8434195 GATGTTATAATCAGCAAGCGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCT 8434136 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||| |||||||| || || ||||||||||| || || Sbjct 8434135 CTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGAT 8434100 >seq6 Length=26303135 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || || || | || | || | ||| || ||||| ||||||| Sbjct 25054560 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 25054501 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| |||||||| || |||||||| || || || || ||||| ||||| Sbjct 25054500 CAGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGG 25054441 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || || |||||| || | ||| || || || Sbjct 25054440 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATGGTATCCGAGCTCTCCAC 25054381 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||||||||| || || | || |||| || |||||||| Sbjct 25054380 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 >seq9 Length=38630433 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | || | |||| ||| || ||| || ||||| | Sbjct 27803947 ACCACCGCGAAGCCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGC 27803888 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||||||| || ||||| || || | ||||| ||||||||||| Sbjct 27803887 AAGAGTACGCCCATCCTCCAATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGG 27803828 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| ||||| || || ||| || | ||| || || || Sbjct 27803827 AATCCCCTCCTTATCTTGAATTTTCGCCTTCACGTTATCGATTGTATCAGAACTCTCCAC 27803768 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || ||||| | || || | || |||||||| Sbjct 27803767 CTCAAGCGTAATCGTCTTTCCAGTCAGCGTCTTCACGAAGATCTGCAT 27803720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984474563516850