Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7 111 3e-19 seq6 96.9 6e-15 seq1 95.1 2e-14 seq4 89.7 9e-13 >seq7 Length=21614486 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || || || ||||| | || | ||| || || ||||| ||| Sbjct 2895775 ATCCCTCCTCTAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 2895834 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || ||||||||||| || ||||||||||||||| Sbjct 2895835 GCAAGTGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGT 2895894 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| ||||| || || || || || Sbjct 2895895 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCC 2895954 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||| |||||||||||||| || ||||| | || ||||||||| Sbjct 2895955 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2896005 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| || || ||||| | || | ||| || ||| ||||| ||| Sbjct 2883241 ATGCCACCACGGAGTCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 2883300 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| |||||||||||||| ||||| ||||| ||| Sbjct 2883301 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGT 2883360 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || |||||| || ||||| || || Sbjct 2883361 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2883420 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| ||||| | ||||| | ||||||||||| Sbjct 2883421 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2883470 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| |||||||| | || | || | || | ||| || ||||| ||||| Sbjct 2883469 ATGCCACCCCTAAGTCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCA 2883528 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||||||||| ||| Sbjct 2883529 GCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGT 2883588 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| |||||| ||||| || || ||| Sbjct 2883589 GGGATCCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCC 2883648 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || |||||||| Sbjct 2883649 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2883698 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || || || ||||| | || | ||| || || ||||| ||| Sbjct 2882785 ATCCCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 2882844 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || ||||||||||| || ||||||||||||||| Sbjct 2882845 GCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGT 2882904 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| || || || || || || || Sbjct 2882905 GGGATACCCTCCTTATCTTGGATCTTGGCTTTAACGTTGTCAATTGTGTCAGAGCTCTCC 2882964 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||| |||||||||||||| || ||||| | || ||||||||| Sbjct 2882965 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2883015 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || || || ||||| | || | ||| || ||| ||||| ||| Sbjct 2896231 ATGCCACCACGAAGCCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 2896290 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| || ||||||||||| ||||| ||||| ||| Sbjct 2896291 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGT 2896350 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || |||||| || ||||| || || Sbjct 2896351 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2896410 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| ||||| | ||||| | ||||||||||| Sbjct 2896411 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||||||||| || | ||||||||||| ||||| || ||||| || ||||| || Sbjct 2896543 TGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATC 2896602 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| |||||| ||||| || || ||| || || || || ||||| || ||| Sbjct 2896603 TTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCA 2896662 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || |||||||| Sbjct 2896663 GTAAGGGTTTTCACAAAGATCTGCAT 2896688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || ||||||||||| || || ||||| ||||| || || || || || || Sbjct 2895622 TCCTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTG 2895681 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| || || ||||| || || || || || ||| Sbjct 2895682 TCCTGAATCTTTGCTTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAGGGTGATG 2895741 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || | ||||||||||| Sbjct 2895742 GTTTTCCCAGTCAATGTCTTGACAAATATCTGCAT 2895776 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || ||||| | || || || || | ||| | ||| || || |||| Sbjct 12607101 TCATAGTTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTAT 12607042 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || ||| | || || | ||||| ||||||||||| |||||||| || | Sbjct 12607041 AATCTGCAAGAGTTCGACCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGAT 12606982 Query 171955 CAGGTGGTATTCCTTCTTTATC 171976 |||| || |||||||| ||||| Sbjct 12606981 CAGGAGGGATTCCTTCCTTATC 12606960 >seq6 Length=26303135 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || | || | || | ||| || |||||| ||||| | Sbjct 25054560 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 25054501 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || | | | || |||||||| || |||||||| || || || || || || ||||| Sbjct 25054500 CAGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGG 25054441 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| || ||||| || || || Sbjct 25054440 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATGGTATCCGAGCTCTCCAC 25054381 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||||||| || || | || |||| ||| |||||||| Sbjct 25054380 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | || | ||| || |||||||| || Sbjct 11147783 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCA 11147724 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || || | ||||| ||||||||||| | || || |||||||| Sbjct 11147723 GCTAGGGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGA 11147664 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || ||| || ||||| |||||||| || || Sbjct 11147663 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTCA 11147604 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || |||| ||||| | || || ||||| Sbjct 11147603 ACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCAT 11147554 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| |||||||| Sbjct 11148239 ATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCA 11148180 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | |||||| ||||||||||| || ||||| || || ||| Sbjct 11148179 GCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGT 11148120 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || |||||||| || || ||| || ||||| ||||| || || ||| Sbjct 11148119 GGGATACCCTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCT 11148060 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || |||||||| || | || || | || || ||||| Sbjct 11148059 ACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 >seq4 Length=31929104 Score = 89.7 bits (98), Expect = 9e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || || || ||||| ||| | |||||| || | || || || || || Sbjct 2302060 TACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAG 2302001 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235 ||||||||||| |||||||| || | |||||| | ||||||||| | ||| ||||| | Sbjct 2302000 AAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCC 2301942 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 ||| ||||| || || ||||| || ||||| || |||| Sbjct 2301941 AGAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTA 2301904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131123579800