Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq431 643 1e-179 >seq431 Length=160619 Score = 643 bits (712), Expect = 1e-179 Identities = 723/962 (75%), Gaps = 4/962 (0%) Strand=Plus/Minus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 ||||| || || |||| ||||| || || ||||||| || || | ||| | ||||| Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 157667 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 157725 ||||| || || | |||||| | |||||||| || || || || || || || ||||| Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 157726 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 157785 ||| || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 157786 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 157845 ||| || || ||| | ||||| || || ||||||||||| ||||| ||||||| || Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 157846 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 157905 | | || || || ||||||| | || | || | |||||| | ||||| | | Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1239 Query 157906 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 157965 |||||||| ||||||||||||||| | |||| | ||||||||||| |||||| ||| Sbjct 1238 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGT 1179 Query 157966 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 158025 |||||||| ||||| || || || || | ||||| ||| | ||||||| ||||||| Sbjct 1178 TGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCA 1119 Query 158026 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158085 ||| ||| || |||| ||||||||| || |||||||||||||| |||| |||| |||| Sbjct 1118 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 1059 Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145 |||||| || ||||||||||||||||||||||| || || ||| | || || ||||| || Sbjct 1058 ATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 999 Query 158146 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC- 158204 |||||| || || || ||| ||||||||| || | || || | || | | || Sbjct 998 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTGATCA 940 Query 158205 GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGA 158264 | ||||| || |||| || || || | ||||||| ||||||||||||||||| | Sbjct 939 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 880 Query 158265 CCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 158324 | ||||| ||||| || || ||||| || || || || |||||||||||||| ||| | Sbjct 879 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 820 Query 158325 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGT 158384 ||||||| || ||||| || ||||||||||| ||||| |||||||| || || ||||||| Sbjct 819 TCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 760 Query 158385 TCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 158444 ||||||| | || | ||| ||||| |||||||| || |||||||| |||||||| | Sbjct 759 TCACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 700 Query 158445 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTG 158504 | | ||||| |||| |||||||| | || |||||||| ||| | | ||||| ||| Sbjct 699 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 640 Query 158505 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTG 158564 ||||||||||||||||||||||| ||||| || || |||||||| || ||||| |||| Sbjct 639 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 580 Query 158565 CT 158566 || Sbjct 579 CT 578 Score = 500 bits (554), Expect = 9e-137 Identities = 719/1008 (71%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || |||||||| || ||||| || ||| | || || Sbjct 34765 GATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTT 34824 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 34825 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34884 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484 || || || || | || ||||||||| | || || ||| || || | || || || || Sbjct 34885 TATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCTTAACCGCCGCAGT 34943 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 34944 TTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACA 35003 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || ||||| ||| | || || | |||| ||||| || |||||||| Sbjct 35004 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGG 35063 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTA 159663 || |||| ||||| ||||| ||| | ||||| |||||||| || || ||| | | Sbjct 35064 CGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAAT- 35122 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | || ||||| ||||| || || ||||||||||| |||||||||||||| || |||| Sbjct 35123 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 35182 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || ||| | ||||| || ||||||| || || || ||||| || ||||| | Sbjct 35183 TGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTA 35242 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | || | ||||||||||| || ||||| || || || || |||| Sbjct 35243 TATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATA 35302 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 ||||||||||||| ||| || | || | || || || | || || ||||| | ||| | Sbjct 35303 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 35362 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 | || || || | | ||||||||| || |||||||| || || ||| | ||| Sbjct 35363 TGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 35422 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023 |||||| || || ||||| || |||||||| || |||||||| ||||| || ||||| | Sbjct 35423 CTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 35482 Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083 | |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | | Sbjct 35483 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 35542 Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATT 160143 || | |||| || |||| | | || || ||||| || || ||||| || || | Sbjct 35543 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACT 35602 Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203 |||| || || ||| | ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 35603 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 35662 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | || || || ||||| || | ||||| ||| |||| || ||||| || ||||||| Sbjct 35663 ATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 35722 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || |||| ||||| || || || | || | || ||||| ||||||| Sbjct 35723 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548371445632920