Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq431 668 0.0 seq9 102 9e-17 >seq431 Length=160619 Score = 668 bits (740), Expect = 0.0 Identities = 741/988 (75%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| ||| | |||||||| || |||| ||||| ||||| | Sbjct 1565 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 1506 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 |||||| || || | ||| | ||||| | || || | || ||||| |||||||| Sbjct 1505 GATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 1446 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||||| Sbjct 1445 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1386 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 || || |||||||| || ||||| ||||| ||||| ||| ||||||| || || || Sbjct 1385 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1326 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 ||||||||| || ||| | ||||||||| | ||||| || ||||||| | || |||| Sbjct 1325 CTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1266 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | | |||||||||||||||||||||||| || ||| Sbjct 1265 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1206 Query 151198 CTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGC 151257 |||||||||| || |||||| |||||||| || ||||| ||||| ||||| || Sbjct 1205 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGC 1146 Query 151258 AGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTAT 151317 || ||| | ||||||| |||||||||| ||| ||||||| ||||| || || || Sbjct 1145 TGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1086 Query 151318 TTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCC 151377 ||||| || ||||||| |||| |||| ||||| || || |||||||| || |||||||| Sbjct 1085 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCC 1026 Query 151378 CTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGG 151437 || || ||| | || || |||||||| ||||| || || || ||| || ||||| || Sbjct 1025 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 966 Query 151438 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGG 151497 ||| |||| || ||| || | | || ||||| ||||| || || || | || Sbjct 965 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 906 Query 151498 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGG 151557 ||||| ||||||||||| ||||| || || || ||||| || || || ||||| ||||| Sbjct 905 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 846 Query 151558 TCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617 || | ||||||||||| ||| ||||||||||| ||||| | ||||||||||| || Sbjct 845 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 786 Query 151618 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAA 151677 || |||||||| || |||||||||||||| || | ||| | ||||| ||||| ||||| Sbjct 785 TGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 726 Query 151678 CCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 151737 ||| || |||||||| |||||||| || | | ||| |||| || || | || || Sbjct 725 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 666 Query 151738 CTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 151797 |||||| || || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 665 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 606 Query 151798 TCACAACTTCCCTCTCGACCTTGCTGCT 151825 ||| ||||||||||| ||||| |||||| Sbjct 605 TCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 655 bits (726), Expect = 0.0 Identities = 761/1017 (75%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAG-AGAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | ||||||||||| ||| | || ||||||||||||||||| |||||||| || Sbjct 34753 TTTGATATTATGGATGACTGG-TTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGG 34811 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||| ||| | ||| | || |||||| |||| || || || || Sbjct 34812 CCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTT 34871 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 152536 | || ||||||||||| || ||||| ||||||||| |||| ||| |||| |||| Sbjct 34872 TGTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 34929 Query 152537 TTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | || |||||||||||||| || || | | | |||||| | || | || ||| Sbjct 34930 TTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGG 34989 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 |||||||| || ||||| ||||| | ||| ||| | || || || ||| | ||| Sbjct 34990 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTT 35049 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCA 152715 || || |||||||| ||||||| ||||| ||||| ||| | || || |||||||| || Sbjct 35050 GTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCG 35109 Query 152716 CG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 152774 || ||| || | | || || || ||||| || || ||||||||||| || |||||||| Sbjct 35110 CGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 35168 Query 152775 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 152834 |||| || || || || || || || |||||||| ||||||| || || || ||| Sbjct 35169 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTT 35228 Query 152835 CGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATT 152894 || || ||||| || || |||||| | ||||| | |||||||| || || |||||||| Sbjct 35229 TGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATT 35288 Query 152895 GAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCAT 152954 ||| || |||||||||||||| ||||| ||| | ||||| | || |||| | || || Sbjct 35289 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 35348 Query 152955 TCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAA 153014 |||||||| ||| || || |||||||| | | |||||||||| ||||| || ||| Sbjct 35349 TCATGGTGCTACCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 35408 Query 153015 AGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTG 153074 ||||| || ||||||| ||||| || ||||| ||||| || |||||||| || || Sbjct 35409 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 35468 Query 153075 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 153134 |||||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | || Sbjct 35469 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 35528 Query 153135 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 153194 |||||| || | ||| | |||| | || ||||| | | ||||| ||||| || || Sbjct 35529 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCT 35588 Query 153195 TCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 153254 ||||| || || || || || || |||||| | || | |||||||||||||||||||| Sbjct 35589 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 35648 Query 153255 GTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGA 153314 ||||| || || ||||| ||||| ||||| ||| ||||||||||| |||| || || Sbjct 35649 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGA 35708 Query 153315 CCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || |||||||| ||| | | |||||||| ||||| | || || || |||||||| Sbjct 35709 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 >seq9 Length=38630433 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 ||||| | |||||||| |||||||||||||| || ||||| || ||| ||||| Sbjct 34088365 GATGATAAATACATCTTAGATGCTGCTGAGGAGGCGGGTGTTGACCTGCCCTATTCTTGC 34088306 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 | ||||| || || ||| | |||||||| |||||| | || |||| ||||| | Sbjct 34088305 AGGGCTGGAGCTTGCTCCACATGTGCTGGGAAGATTATTTCAGGCTCAGTGGATCAATCT 34088246 Query 152115 GACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCA 152174 ||| || ||| | |||||| | || || || |||| |||||||| |||||| || Sbjct 34088245 GACGGTTCCTTCCTTGATGATAAACAAATGGAGGAGGGATATGTGCTGACTTGTGTTTCA 34088186 Query 152175 TATCCAACTTCTGA 152188 || ||||| || || Sbjct 34088185 TACCCAACCTCGGA 34088172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549619438909320