Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 199 5e-45 >seq4 Length=31929104 Score = 199 bits (220), Expect = 5e-45 Identities = 222/294 (76%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||||||||| |||||||| || || || | |||| || | |||| Sbjct 2301751 GAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGGCGATTTGG 2301692 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||||||||||||| |||| || || ||| |||||||| ||| ||| ||||| Sbjct 2301691 ACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGGCTGCGAAG 2301632 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||||||| ||| | ||| | || | |||||||| || Sbjct 2301631 AAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTCCCAGTGG-CG 2301573 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | || | ||| || || |||||||||||||| | ||||| ||||| || ||||| Sbjct 2301572 TAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTTTCTTGTA 2301513 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| |||||||||| | |||| |||| ||||| | | ||| |||| ||||| Sbjct 2301512 CATTTCCCATACTTCCGGGTATTGGATCGGGAACATGCAAAACCGGTCCGGGTT 2301459 Score = 123 bits (136), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || | |||||| || ||||||||||| || ||||| || Sbjct 2301991 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAA 2301932 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| ||||| |||| ||||| ||||| || || || || | Sbjct 2301931 ATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACC------G 2301878 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| |||| |||||| ||||| || || ||| ||||||| || |||| |||| Sbjct 2301877 TCGATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCG 2301818 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | ||||| ||| ||||||| | |||||||| || || || | ||||| Sbjct 2301817 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAG 2301765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107103830121627