Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 136 4e-27 seq5 132 4e-26 seq7 129 5e-25 seq6 129 5e-25 seq2 125 6e-24 seq1 113 4e-20 >seq9 Length=38630433 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| |||||||| ||||| || || ||||| || || | | Sbjct 27803035 GATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGCTC 27803094 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 27803095 AGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 27803154 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || |||||||| ||||| || || || || || ||| | | | ||||| || Sbjct 27803155 ACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTACAA 27803214 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||||||||| || ||| |||| Sbjct 27803215 TATCCAAAAGGAATCGACTCTCCACCTGGT 27803244 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| |||||||| || || || || || ||||| ||| | | Sbjct 27803264 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTTGAAGTCGAAAGCTCT 27803323 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | |||||||||||||| || || || ||||| || || Sbjct 27803324 GACACGATCGACAACGTTAAGGC-CAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 27803382 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || |||||||| || || || ||||| ||||| | | | || | || || || Sbjct 27803383 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCGGACTACAA 27803442 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| | | ||||||||||| Sbjct 27803443 TATCCAGAAGGAATCAACCCTTCACCTTGTGCTCAGGCTGCGCGGAGGC 27803491 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || ||||||| | ||||| ||||||||||| || || ||||| | Sbjct 27803492 ATGCAGATTTTCGTTAAAACCTTGACCGGGAAAACTATTACTCTGGAGGTAGAGAGTTCG 27803551 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || |||| || ||||| ||||| || || ||||| || ||||| ||||| Sbjct 27803552 GATACAATTGATAACGTCAAGGCAAAA-ATCCAGGATAAGGAAGGGATCCCTCCGGATCA 27803610 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||| || |||||||| ||| ||||||| || | | | | ||||| || Sbjct 27803611 GCAGAGGTTGATATTCGCCGGGAAGCAGTTGGAGGACGGCAGGACCCTTGCGGATTACAA 27803670 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | ||| || | | || ||||| Sbjct 27803671 CATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGAGGCTCCGTGGAGG 27803718 >seq5 Length=39371879 Score = 132 bits (146), Expect = 4e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | ||||| ||||| || || |||||||| || || Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| ||||||||||| || |||||||| || Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAA-ATCCAGGACAAAGAAGGCATCCCTCCCGACCA 2688766 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | ||||| |||||||||||||||||||| | | || | |||||||| Sbjct 2688765 ACAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAA 2688706 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || |||||||| ||||| || ||| Sbjct 2688705 TATCCAAAAGGAGTCGACTCTCCAC 2688681 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || || || ||||| || || || || || | | Sbjct 2688656 ATGCAAATCTTTGTCAAAACCTTGACAGGAAAGACTATAACCCTGGAGGTCGAGAGCTCG 2688597 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || ||||||||| || ||||| || || || || || Sbjct 2688596 GACACGATTGATAACGTTAAGGCCAA-GATCCAAGATAAGGAAGGGATCCCACCAGACCA 2688538 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| |||||||| || ||||| ||||| ||||| ||| | | || | ||||| || Sbjct 2688537 ACAACGATTGATCTTCGCTGGGAAGCAGCTTGAGGACGGGAGGACCTTGGCTGATTACAA 2688478 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || || | || ||| | | || ||||| Sbjct 2688477 CATACAAAAGGAATCAACCCTTCATCTTGTTTTGAGGCTTCGTGGAGG 2688430 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | ||||||||||| || || |||||||| || || Sbjct 2689112 ATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATCACCCTCGAAGTGGAGAGTTCC 2689053 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 2689052 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAG 2688993 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| |||||||||||||| || || | | | || | ||||||||| Sbjct 2688992 CAAAGGCTCATCTTCGCCGGGAAACAGCTCGAAGACGGTCGTACCTTGGCGGATTATAAC 2688933 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 2688932 ATCCAGAAGGAGTCAACTCTCCACCTGGT 2688904 Score = 105 bits (116), Expect = 6e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || ||||| || || || || ||||| || || | Sbjct 2689342 GATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATAACTCTCGAGGTCGAGAGTTC 2689283 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| ||| | || |||||||||||| ||||| || || ||||| | Sbjct 2689282 CGACACCATCGACAACGTTAAGGCCAA-GATCCAAGACAAGGAAGGGATCCCACCCGACC 2689224 Query 24822 AACAACGTTTGATCTTTGC-CGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 | ||| | | ||||| || || |||||||| || || | | | || | ||||| Sbjct 2689223 AGCAAAGGCTCATCTTCGCGTGGCAAACAGCTCGAAGACGGCCGTACCTTGGCGGATTAC 2689164 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| ||||| || ||| |||| Sbjct 2689163 AACATCCAGAAGGAGTCGACTCTCCACCTGGT 2689132 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || ||||| || || | || || ||| | Sbjct 2688428 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTCG 2688369 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| || || || |||||||| || || ||||| Sbjct 2688368 GATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCAG 2688309 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||||||||| || |||||||| ||| | | | ||||||||| Sbjct 2688308 CAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 2688249 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| || || || || || ||| Sbjct 2688248 ATTCAGAAAGAGTCTACCCTCCAC 2688225 >seq7 Length=21614486 Score = 129 bits (142), Expect = 5e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || |||||||| || || | || || || | | Sbjct 2883014 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTCT 2882955 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| |||| | || ||||||||| || || || || || || || || Sbjct 2882954 GACACAATTGACAACGTTAAAGCCAA-GATCCAAGATAAGGAGGGTATCCCACCTGACCA 2882896 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA-GAAACATGTCAGATTATA 24881 ||| | ||||| ||||| || || ||||| |||||| || || || || |||| |||| Sbjct 2882895 ACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTTG-CAGACTATA 2882837 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||||||| || || || || ||||| ||||| || | ||||| Sbjct 2882836 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTGAGAGGAGG 2882788 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || |||||||| || || | || || || | | Sbjct 2896004 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTCT 2895945 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||||||||| || || || || || || || ||| Sbjct 2895944 GACACAATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 2895885 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA-GAAACATGTCAGATTATAA 24882 || | ||||| ||||| || || ||||| || ||| || || || || |||| ||||| Sbjct 2895884 CAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGGAGGACACTTG-CAGACTATAA 2895826 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| |||||||| || || || || ||||| ||||| Sbjct 2895825 CATCCAAAAGGAGTCAACCCTGCATTTGGTCTTGCG 2895790 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || ||||| || ||| | | Sbjct 2896689 GATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 2896630 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||||| ||||| || || || || || Sbjct 2896629 TGACACTATTGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCA 2896570 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || |||||||| |||||| | | | | | ||||| || Sbjct 2896569 ACAGAGGCTTATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACCCTTGCTGATTACAA 2896510 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 2896509 TATCCAGAAGGAGTCCACCCTCCAC 2896485 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || ||||| || ||| | | Sbjct 2883699 GATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTC 2883640 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| ||||| |||||||| ||||| || || || || || Sbjct 2883639 TGACACTATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCAGACCA 2883580 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || |||||||| |||||| | | | | | ||||| || Sbjct 2883579 ACAGAGGCTTATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACCCTTGCTGATTACAA 2883520 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 2883519 TATCCAGAAGGAGTCCACCCTCCAC 2883495 Score = 102 bits (112), Expect = 7e-17 Identities = 98/122 (80%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||| |||||||| ||||| ||||| || | ||||| ||||| || |||||||| || Sbjct 12529262 GACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAA 12529321 Query 24857 GAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGT 24914 ||| |||| | | || ||||||||||||| |||||||| ||||| || |||||||| | Sbjct 12529322 GATGGTCGA-ACTCTTG-CAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTT 12529379 Query 24915 TG 24916 || Sbjct 12529380 TG 12529381 Score = 102 bits (112), Expect = 7e-17 Identities = 98/122 (80%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 || || |||||||| ||||| ||||| || | ||||| ||||| || |||||||| ||| Sbjct 12606960 GATAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAG 12607019 Query 24857 GAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGT 24914 ||| |||| | | || ||||||||||||| |||||||| ||||| || |||||||| | Sbjct 12607020 GATGGTCGA-ACTCTTG-CAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTT 12607077 Query 24915 TG 24916 || Sbjct 12607078 TG 12607079 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || | || || || | Sbjct 2883470 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCG 2883411 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 2883410 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 2883351 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || ||||| || |||||||| || ||| |||| | | |||| |||||| Sbjct 2883350 CAGAGGTTAATTTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 2883291 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || |||||||||||| | || || ||| Sbjct 2883290 ATTCAGAAGGAGTCAACCCTCCATTTGGTGTTGCGACTCCGTGGTGGC 2883243 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || | || || || | Sbjct 2896460 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCG 2896401 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 2896400 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGACCAG 2896341 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || |||||||| |||||||| || ||| |||| | | |||| |||||| Sbjct 2896340 CAGAGGTTAATTTTTGCCGGAAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 2896281 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || ||||||||||| | || || ||| Sbjct 2896280 ATTCAGAAGGAGTCAACCCTCCATTTGGTGTTGCGGCTTCGTGGTGGC 2896233 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||| |||||||| ||||| ||||| || | ||||| ||||| || |||||||| || Sbjct 12547888 GACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAA 12547947 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| ||| | ||||||||||||| |||||||| ||||| || |||||||| ||| Sbjct 12547948 GATGGTTGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTTG 12548007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | || || ||||| || || || || || || | | Sbjct 2895777 GATGCAGATATTTGTCAAGACATTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTC 2895718 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||| || ||||| || || || ||||| || || Sbjct 2895717 AGACACAATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCA 2895658 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | ||||||||||| || || ||| |||||||| Sbjct 2895657 GCAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAGGAT 2895621 >seq6 Length=26303135 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || ||||| || || || || ||||| ||| | | Sbjct 25054104 GATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATAACCCTGGAAGTCGAAAGCTC 25054163 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 25054164 CGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCAGACCA 25054223 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| ||||| ||||| ||||| ||| || | |||||||| Sbjct 25054224 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAA 25054283 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||| || || |||||||| || ||||| ||| Sbjct 25054284 CATTCAGAAAGAGTCGACACTTCATTTGGTTTTG 25054317 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || ||||| || || || || |||||||| || | Sbjct 25053876 GATGCAGATCTTCGTTAAGACACTCACCGGCAAGACAATCACCCTCGAAGTCGAGAGTTC 25053935 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 25053936 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 25053995 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | |||||||| ||||| ||||| ||||| ||| | || | ||||| || Sbjct 25053996 ACAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCCGAACCTTGGCCGATTACAA 25054055 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| ||||| || ||| Sbjct 25054056 CATCCAGAAGGAGTCGACTCTCCAC 25054080 >seq2 Length=41236440 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 32406711 ACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCC 32406652 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||||||||| ||||| || ||||| || Sbjct 32406651 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGAC 32406592 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||||||| | ||||| ||||| || ||||| || || | | | | | || ||| Sbjct 32406591 CAACAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTAGCCGACTAT 32406532 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||| ||||| || || || || |||| | || | ||||| |||| Sbjct 32406531 AACATTCAGAAGGAGTCCACCCTCCATCTGGTCCTCCGCCTCCGCGGTGGCG 32406480 >seq1 Length=37323695 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || || || || || || ||| || | Sbjct 32435915 GATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAATCCTC 32435856 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||| ||||| |||||||| || || ||||| Sbjct 32435855 TGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCA 32435796 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||| ||||| || ||||| || || | | | | | || || || Sbjct 32435795 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTAGCCGACTACAA 32435736 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || ||| Sbjct 32435735 TATTCAGAAGGAATCCACCCTTCAC 32435711 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || |||||||| || || | || ||||| | | Sbjct 11148010 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCG 11148069 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || ||||| || || || || ||||| Sbjct 11148070 GACACTATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 11148129 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAA-ACATGTCAGATTATAA 24882 || | ||||| ||||| || ||||| || || ||| || | || || | |||||||| Sbjct 11148130 CAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTG-CTGATTATAA 11148188 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| || || || |||||||| Sbjct 11148189 CATTCAAAAGGAGTCAACCCTTCACTTGGT 11148218 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | || || || ||||| || ||||| || | || || || | Sbjct 11148237 GATGCAAATTTTTGTGAAGACTCTTACCGGAAAGACTATCACATTGGAGGTTGAGAGTTC 11148296 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||| || || || || || || || || Sbjct 11148297 AGACACCATTGATAATGTGAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCA 11148356 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || || ||||| || ||| |||| | | || ||||| Sbjct 11148357 GCAAAGGCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCGCTGACTATAA 11148416 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || |||||||||||||| || || || || Sbjct 11148417 TATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTTTACGTGGTGG 11148464 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | || || || || || ||| | || || || | | Sbjct 11148465 GATGCAGATATTTGTGAAGACCTTGACTGGAAAGACAATAACGTTGGAGGTTGATAGCTC 11148524 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| || || || ||||| || || Sbjct 11148525 AGACACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGGATCCCTCCAGACCA 11148584 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||| ||||| ||||| |||||||||||| ||||| || |||| || || Sbjct 11148585 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGGAGAACTCTGGCAGACTACAA 11148644 Query 24883 CATTCAAAAGGAATCGAC 24900 ||| || |||||||| || Sbjct 11148645 CATCCAGAAGGAATCCAC 11148662 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | ||||| ||||| || || || || || || || || || | | Sbjct 11147553 GATGCAAATCTTTGTGAAAACCCTAACAGGCAAGACCATCACCCTTGAGGTTGAGAGCTC 11147612 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||||||||| |||||||| ||||| || || Sbjct 11147613 TGATACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCA 11147672 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | || ||||| || |||||||| || ||| ||| | | | || ||||| Sbjct 11147673 GCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGTCGAACCCTAGCTGACTATAA 11147732 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || || |||||| Sbjct 11147733 TATCCAGAAGGAGTCCACCCTCCATTTGGTG 11147763 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || ||||| || | || || || | | Sbjct 11147782 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 11147841 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| |||||||| ||||| |||||| Sbjct 11147842 GATACTATTGACAATGTTAAAGCGAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCAA 11147901 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || |||||||| || || | | | | | || ||||| Sbjct 11147902 CAAAGACTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTATAAT 11147961 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || |||||| | || | || || ||| Sbjct 11147962 ATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGTCTTCGAGGTGGC 11148009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| || |||||||| || ||||| ||||| || | ||||| ||||| || || || Sbjct 8434100 ATCCAGGATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAA 8434159 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 ||||| ||| ||| | | ||||||||||| |||||||| || ||||| ||| | Sbjct 8434160 CTGGAAGATGGCCGAACGCTTGCTGATTATAACATCCAAAAGGAGTCCACACTTCACCTT 8434219 Query 24911 GTGTTG 24916 || ||| Sbjct 8434220 GTTTTG 8434225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895176176680