Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq6 86.0 5e-12 seq7 82.4 6e-11 >seq5 Length=39371879 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||||| |||||||||||||| ||| ||||| ||| | | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || || || |||||||||||| | || || ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || |||||||||||||| | | | || |||| ||||| || Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAT 2688705 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || || || Sbjct 2688704 ATCCAAAAGGAGTCGAC 2688688 >seq6 Length=26303135 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || || | |||||||| || || ||| ||||| ||| | Sbjct 25053874 AAGATGCAGATCTTCGTTAAGACACTCACCGGCAAGACAATCACCCTCGAAGTCGAGAGT 25053933 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| ||||| | || ||| Sbjct 25053934 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGAC 25053993 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||||| ||||| | ||| || || ||||| ||||| | | |||| |||| |||||| Sbjct 25053994 CAACAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCCGAACCTTGGCCGATTAC 25054053 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 25054054 AACATCCAGAAGGAGTCGAC 25054073 >seq7 Length=21614486 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| ||||| | || ||||| ||||| ||| |||| ||| || || Sbjct 2883698 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 2883639 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || ||| |||||| ||||| ||||| | || || Sbjct 2883638 GAC---ACTATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCAGAC 2883582 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || ||||| | ||| ||||||||||| ||||||| | | || | || |||||| Sbjct 2883581 CAACAGAGGCTTATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACCCTTGCTGATTAC 2883522 Query 110450 AACATTCAAAAAGAATCTAC 110469 || || || || || || || Sbjct 2883521 AATATCCAGAAGGAGTCCAC 2883502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839431420483