Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 170 3e-36 >seq4 Length=31929104 Score = 170 bits (188), Expect = 3e-36 Identities = 208/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || | |||||| || || |||||||| || ||||| || Sbjct 2301991 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAA 2301932 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| ||||| ||| ||||| ||||| ||||| ||| || || Sbjct 2301931 ATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGTC---- 2301876 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| |||| ||||||||| || || || ||| | ||||| || |||| |||| Sbjct 2301875 --GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCG 2301818 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 | ||||| ||| ||| ||| | |||||||| ||| || || | |||||| || Sbjct 2301817 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATAC 2301758 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||||||||| ||||||||||| || Sbjct 2301757 ATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 2301714 Score = 165 bits (182), Expect = 1e-34 Identities = 201/270 (74%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||| ||||||||||| || |||| || || || |||||||| Sbjct 2301706 GCCTCGGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCA 2301647 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||||||||| |||| ||||| || ||| | ||| | || Sbjct 2301646 TCGGAGGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGA 2301587 Query 796270 GAGACCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| ||| || | ||| ||||| |||||||||||||||||||||| Sbjct 2301586 GTTTCCCAGTGG--CGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGG 2301529 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATA--TCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 | ||||| || |||||||| ||||||| |||| |||| |||| ||||||| ||| Sbjct 2301528 CTTCGGCTTTCTTGTACATTTCCCATACTTCCG--GGTATTGGATCGGGAACATGCAAAA 2301471 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | ||||| ||||| Sbjct 2301470 CCGGTCCGGGTTCGAGGCGAGCAGTGGCTC 2301441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916200552564209