Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq1 131 1e-25 seq9 118 7e-22 seq7 107 1e-18 seq5 95.1 8e-15 seq6 93.3 3e-14 >seq2 Length=41236440 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | |||| ||||||||||||||||||||| | |||| | || | || Sbjct 32406497 AGGACCAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCT 32406556 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || ||||| ||||| | || | || |||||||| Sbjct 32406557 TCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCT 32406616 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||||| || | |||||||||| Sbjct 32406617 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTC 32406676 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| ||||| || || |||||||||||| Sbjct 32406677 TTACCCGTTAGGGTTTTCACGAAGATCTGCATG 32406709 >seq1 Length=37323695 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||||| || ||||| | || | |||| | || Sbjct 32435703 AGGACGAGGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCT 32435762 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || |||||||| || | || | || |||||||| Sbjct 32435763 TCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCC 32435822 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| ||| || ||||| || | |||||| Sbjct 32435823 TGGATCTTGGCTTTGAC--AT--TGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTAT 32435878 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| ||||| || || ||||||||||| Sbjct 32435879 GGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 32435914 >seq9 Length=38630433 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || ||| || || ||||||| ||| |||||||| || || ||||||| Sbjct 27803490 CCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCCGCC 27803431 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || || || ||||| || |||||||||| ||| || ||||| | || Sbjct 27803430 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGG 27803371 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | |||| ||| | ||||| Sbjct 27803370 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACT 27803311 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || |||||||| || || ||||| || || |||||||||||| Sbjct 27803310 TCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATG 27803263 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| || || | || | ||| |||| Sbjct 27803931 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTACGCCCATCC 27803872 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| || || | ||||| || | || | ||||||||| || Sbjct 27803871 TCCAATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCT 27803812 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTC-ATTGGC---CTCGACATCAACGGTTAT 34941 | ||||| || ||| |||||||| || | ||| || |||| || || Sbjct 27803811 TGAATTTTCGCCTTCACGT----TATCGATTGTATCAGAACTCTCCACCTCAAGCGTAAT 27803756 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| || ||||||||||| Sbjct 27803755 CGTCTTTCCAGTCAGCGTCTTCACGAAGATCTGCAT 27803720 >seq7 Length=21614486 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| || || ||||| | || |||| |||| Sbjct 2882575 AGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCC 2882634 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| | ||||||||| | || | |||||||||||| Sbjct 2882635 TCCAACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 2882694 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| || | |||| || | ||| || || | ||| ||||| Sbjct 2882695 TGAATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTT 2882754 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| ||||| |||||||| Sbjct 2882755 TTCCCAGTCAAGGTCTTCACAAATATCTGCAT 2882786 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| || || || || | ||| |||| |||| Sbjct 2896477 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCC 2896536 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||| || | || |||||| | || | ||| |||||||| Sbjct 2896537 TCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCT 2896596 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || |||| || ||| | || || || | ||| || Sbjct 2896597 TGGATCTTGGCTTTGAC--AT--TATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGAT 2896652 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || ||||| || |||||||||||||| Sbjct 2896653 GGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2896688 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| || || ||||| | || |||| |||| Sbjct 2895565 AGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCC 2895624 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| | ||||||||| | || | |||||||||||| Sbjct 2895625 TCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 2895684 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| || | || | || | ||| || || | ||| ||||| Sbjct 2895685 TGAATCTTTGCTTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTT 2895744 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| ||||| |||||||| Sbjct 2895745 TTCCCAGTCAATGTCTTGACAAATATCTGCAT 2895776 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||| || || || || | ||| |||| |||| Sbjct 2883487 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCC 2883546 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||| || | || |||||| | || | ||| |||||||| Sbjct 2883547 TCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCT 2883606 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || |||| || ||| | || || || | ||| || Sbjct 2883607 TGAATCTTAGCTTTGAC--AT--TATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGAT 2883662 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || ||||| || |||||||||||||| Sbjct 2883663 GGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 2883698 >seq5 Length=39371879 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||| |||||||||||||| || | || | | | |||| Sbjct 2688217 AGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCC 2688276 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||| ||||| || | |||||| ||| | || | || ||||| || Sbjct 2688277 TCCAATTGCTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCC 2688336 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATT-CATTGG---CCTCGACATCAACGGTTAT 34941 | || ||| ||||| || |||||||| || | || || || | ||| || Sbjct 2688337 TGAATCTTTGCCTTGAC--AT--TATCGATTGTATCCGAACTTTCCACCTCCAAGGTGAT 2688392 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || | |||||| ||||| |||||||| Sbjct 2688393 TGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 2688428 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | || ||||||||| |||||||| |||| | | | || | || Sbjct 2688901 AGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGACCGTCT 2688960 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || | ||||||||| | || | ||| |||||||| Sbjct 2688961 TCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCT 2689020 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || ||| || || | ||| ||||| Sbjct 2689021 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACTTCGAGGGTGATGGTT 2689080 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| || || ||||||||||| Sbjct 2689081 TTACCGGTCAAGGTTTTGACGAAGATCTGCAT 2689112 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | || ||||||||| ||||| || |||| | | | || | || Sbjct 2689129 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCGTCT 2689188 Query 34826 TCCAGTTGCTTTCC-GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || || |||||||| || | ||||||||| | || | ||| |||||||| Sbjct 2689189 TCGAGCTGTTTGCCACGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTC 2689248 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || |||||| || | |||||||| Sbjct 2689249 TTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGT 2689308 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || ||||| || || ||||||||||| Sbjct 2689309 CTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2689341 >seq6 Length=26303135 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||||| |||| |||| || ||| |||||||||||||| || | | | || | Sbjct 25054320 CCTCAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACC 25054261 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || || ||||| || || ||||| || | |||||||||| |||| | || ||||| Sbjct 25054260 GTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTCCTT 25054201 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || || ||| | || | || | ||||| || | |||||| Sbjct 25054200 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGTTAT 25054141 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| || ||||||||||| Sbjct 25054140 CGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 25054105 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||||||||| |||| |||||||||||| || || || | || | | |||| Sbjct 25054545 CAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATC 25054486 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| || || || |||| | |||||| ||| | || | ||| |||||||| Sbjct 25054485 TTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTC 25054426 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || ||| || || || |||| || || | ||| || || | || | Sbjct 25054425 CTGAATCTTTGCCTTAAC--AT--TATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAA 25054370 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || ||||| || || |||||||| Sbjct 25054369 TGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691089196789