Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq5 98.7 8e-16 seq1 87.8 1e-12 >seq7 Length=21614486 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| | || || || || |||||| | ||| ||| | Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | |||||| ||||| || || ||||| | || ||||| Sbjct 2896172 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2896113 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||| ||||||| | | || | || || ||||| Sbjct 2896112 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2896053 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || | ||| ||||| || | |||| || |||| Sbjct 2896052 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGAA 2896004 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || ||| | || || || || |||||| | ||| ||| | Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | |||||| ||||| || || ||||| | || ||||| Sbjct 2883182 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2883123 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||| ||||||| | | || | || || ||||| Sbjct 2883122 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2883063 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || | ||| ||||| || | |||| || |||| Sbjct 2883062 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGAA 2883014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| ||||| || || || |||||||| || | || |||| ||| Sbjct 2883015 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2882956 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || ||| ||||| ||||| || || | || || | Sbjct 2882955 T-GACACAATTGACAACGTTAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 2882897 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| | |||| ||| || || ||||| ||||| | | ||| | || ||||| | Sbjct 2882896 AACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTTGCAGACTATA 2882837 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||| ||||||||||| || |||| |||| ||| | || |||| || Sbjct 2882836 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTGAGAGGAGG 2882788 >seq5 Length=39371879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||||| || ||||||||||| ||| ||||| ||| | | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || || || ||||||||| | || || || Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || |||||||||||||||| | || |||| || || || Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAT 2688705 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 2688704 ATCCAAAAGGAGTCGAC 2688688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||||||||| || || || || ||||| || ||| | || ||| | Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||||| ||||| ||||| | ||| ||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || || || ||||||| | | || | || || || || Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| Sbjct 2688249 CATTCAGAAAGAGTCTAC 2688232 >seq1 Length=37323695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| ||| | ||||| ||||| || || | || ||| ||| | Sbjct 11148010 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCG 11148069 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| |||||||| || | || ||||| Sbjct 11148070 -GACACTATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 11148128 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || ||||| || || || | | ||| | || || || || Sbjct 11148129 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 11148188 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || | ||| |||| Sbjct 11148189 CATTCAAAAGGAGTCAACCCTTCACTTGGT 11148218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874704774959