Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq9 125 6e-24 seq7 125 6e-24 seq6 111 1e-19 seq5 111 1e-19 seq2 91.5 1e-13 >seq1 Length=37323695 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||||||||| |||| || | Sbjct 11148225 ACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCC 11148166 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| |||||| | ||||| || |||||||| || || ||||||||||| Sbjct 11148165 ATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCCTCTTT 11148106 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | |||||| | || | |||||| || ||||| || | ||| | Sbjct 11148105 ATCCTG-AATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTACCTCCAAAGTGA 11148047 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | || || ||||| || ||||| Sbjct 11148046 TCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || ||||| || || || || ||||| || || | ||| ||| Sbjct 11147769 ACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCGACC 11147710 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||||||| | || | |||||||| || || || || || || || Sbjct 11147709 ATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTT 11147650 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||| ||||| || || ||||| || || Sbjct 11147649 GTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGGGTGAT 11147590 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| |||||| ||||| || ||||| Sbjct 11147589 GGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCAT 11147554 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || || | ||||| |||||||| || ||||| || || || || Sbjct 32435688 CCACCCCTGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCT 32435747 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || ||||| || | || | | |||||||||||| || Sbjct 32435748 AAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGG 32435807 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||||||| | || | |||||||| ||| || Sbjct 32435808 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACC 32435867 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| || || |||||||| || Sbjct 32435868 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATCTT 32435917 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| ||||| || || || || ||||| || || | ||||||| Sbjct 11147997 ACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTGCGACC 11147938 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || |||||||||||| | || | |||||| ||||| || || || || || || Sbjct 11147937 GTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTT 11147878 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||| ||||| || || || | || || Sbjct 11147877 GTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAGGTGAT 11147818 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || | || || ||||| || ||||| Sbjct 11147817 AGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 11147782 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| | |||||||| || || ||||| || || || | || | | Sbjct 11148680 CGAAGAACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGAGTTCTCCCA 11148621 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || ||||| || || || || ||||| ||| Sbjct 11148620 TCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCCTCCTTG 11148561 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | ||||| || || || || | ||||| Sbjct 11148560 TCCTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAGCTATCAACCTCCAACGTTATT 11148501 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| || |||||||||||||| Sbjct 11148500 GTCTTTCCAGTCAAGGTCTTCACAAATATCTGCAT 11148466 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || || | ||||| ||||| || ||||| ||||||||||| || Sbjct 8434240 TCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGGATGTTATAATCAGC 8434181 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || ||| || ||||| || |||||| | ||||| || |||||||| || || Sbjct 8434180 AAGCGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGG 8434121 Query 29679 AATACCCTCTTTGTCTTG 29696 || || ||||| || || Sbjct 8434120 GATGCCTTCTTTATCCTG 8434103 >seq9 Length=38630433 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||||| || ||||| || || || || || ||||| | |||||| || Sbjct 27803475 AGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCGTCC 27803416 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || |||||||| | ||||||| || || ||||| || || ||||| |||||| Sbjct 27803415 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCT 27803356 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || || | || | |||||||| ||| ||||||||||| || || Sbjct 27803355 TGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTC 27803296 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| |||| |||||| || || |||||||| Sbjct 27803295 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 27803264 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||||| ||||| || || || ||||| |||||||||| ||| | || Sbjct 27803704 CAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCTGCCGTC 27803645 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | || || || || ||||||| || ||||||||||| || || || || || || Sbjct 27803644 CTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTATC 27803585 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | |||| ||||| | || | || || ||| ||||| || ||||| ||||| Sbjct 27803584 CTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGAGTAATAGT 27803525 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||||||||| || |||||||| Sbjct 27803524 TTTCCCGGTCAAGGTTTTAACGAAAATCTGCAT 27803492 >seq7 Length=21614486 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||||| || || || || || || || || | |||||| | Sbjct 2882572 CGAAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCA 2882631 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || ||||||||| | ||||| || ||||| || || ||||| ||||| ||| Sbjct 2882632 TCCTCCAACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTG 2882691 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| ||| ||| | || | ||||| || || || || || || || Sbjct 2882692 TCCTG-AATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGAT 2882750 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| ||||| || |||||||||||||| Sbjct 2882751 GGTTTTCCCAGTCAAGGTCTTCACAAATATCTGCAT 2882786 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||||||| || || || || || ||||||||||| || |||| ||| | | Sbjct 2883256 CGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCA 2883315 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| |||||| | || || || ||||| || || || |||||||| ||| Sbjct 2883316 TCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 2883375 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || ||| | || | || || ||| || || || | ||| || Sbjct 2883376 TCCTG-AATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGAT 2883434 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | ||||| |||||||||||||| Sbjct 2883435 GGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2883470 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||||||| || || || || || ||||||||||| || |||| ||| | | Sbjct 2896246 CGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCA 2896305 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | || || || ||||| ||||| || |||||||| ||| Sbjct 2896306 TCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGTGGGATACCCTCCTTG 2896365 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || ||| | || | || || ||| || || || | ||| || Sbjct 2896366 TCCTG-AATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGAT 2896424 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | ||||| |||||||||||||| Sbjct 2896425 GGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||||| || || || || || || || || | |||||| | Sbjct 2895562 CGAAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCA 2895621 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || |||||| | ||||| || ||||| || || ||||| ||||| ||| Sbjct 2895622 TCCTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTG 2895681 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| ||| ||| | || | ||||| || || || || || || || Sbjct 2895682 TCCTG-AATCTTTGCTTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAGGGTGAT 2895740 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || || || |||||||||||||| Sbjct 2895741 GGTTTTCCCAGTCAATGTCTTGACAAATATCTGCAT 2895776 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || ||||| ||||| || || || ||||| ||||||||||| || Sbjct 12529396 TCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGC 12529337 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || |||||||||||| | |||||||| |||||||| || || Sbjct 12529336 AAGAGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 12529277 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || ||||| | ||| Sbjct 12529276 GATTCCTTCCTTGTCCTATAA 12529256 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || |||||||||||| || || || || || ||||| || || ||||| || Sbjct 2883015 TCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGC 2883074 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | |||||||| ||| |||||| || || ||||| || || Sbjct 2883075 AAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGG 2883134 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || | || ||| ||| | || | || |||||| || || Sbjct 2883135 GATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAAC 2883194 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || ||||| || ||||| | || || ||||| || ||||| Sbjct 2883195 TTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || |||||||||||| || || || || || ||||| || || ||||| || Sbjct 2896005 TCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGC 2896064 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | |||||||| ||| |||||| || || ||||| || || Sbjct 2896065 AAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGG 2896124 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || | || ||| ||| | || | || |||||| || || Sbjct 2896125 GATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAAC 2896184 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || ||||| | ||||| ||||| || ||||| Sbjct 2896185 TTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || ||||| ||||| || || || ||||| ||||||||||| || Sbjct 12548022 TCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGC 12547963 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | | ||| || || |||||||||||| | |||||||| |||||||| || || Sbjct 12547962 AAGAGTTCAACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 12547903 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || ||||| | ||| Sbjct 12547902 GATTCCTTCCTTGTCCTATAA 12547882 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || ||||| ||||| || || || ||||| ||||||||||| || Sbjct 12607094 TCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGC 12607035 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || |||||||||||| | |||||||| |||||||| || || Sbjct 12607034 AAGAGTTCGACCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 12606975 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || || || | ||| Sbjct 12606974 GATTCCTTCCTTATCCTATAA 12606954 >seq6 Length=26303135 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||||||||| || || ||||| |||||||||||||| || | || ||| || ||| Sbjct 25054313 ACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTCCTCG 25054254 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || |||||| | || | |||||||| || ||||| || || || ||||| || Sbjct 25054253 AGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGG 25054194 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || || | || | ||||| || ||| ||||| || ||||| || || Sbjct 25054193 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGTTATCGTCTTA 25054134 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| || || || |||||||| Sbjct 25054133 CCCGTCAGGGTCTTGACGAAGATCTGCAT 25054105 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||| ||||| ||||| || || ||||| || ||||| || | || | | Sbjct 25054547 CGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCA 25054488 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| ||||||| ||||||||||| || ||||| || || ||| Sbjct 25054487 TCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTG 25054428 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| || ||| | || | || || || || || || | ||| || Sbjct 25054427 TCCTG-AATCTTTGCCTTAACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAAT 25054369 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | || ||||| || |||||||| Sbjct 25054368 GGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 >seq5 Length=39371879 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| || || || || || || || |||||||||||||| | ||| ||| Sbjct 2688897 ACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGACC 2688956 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| ||||| || || | || | |||||||| || || || || || || || Sbjct 2688957 GTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTT 2689016 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||| | || | ||||| ||| || ||||| || || || Sbjct 2689017 GTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACTTCGAGGGTGAT 2689076 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || |||||||| || || |||||||| Sbjct 2689077 GGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCAT 2689112 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || || || ||||| |||||||||||||| || | || | Sbjct 2688213 ACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCC 2688272 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || || ||| | || | ||||||||||| || || || || || || Sbjct 2688273 ATCCTCCAATTGCTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTT 2688332 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| |||| |||||| | || | || || ||| ||| || || | || | Sbjct 2688333 ATCCTG-AATCTTTGCCTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGA 2688391 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| ||||| ||||| || ||||| ||||||||| Sbjct 2688392 TTGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 2688429 >seq2 Length=41236440 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| ||| || ||||| || || ||||||||||| || || | ||| || Sbjct 32406494 CGGAGGACCAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCG 32406553 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | || | | ||| || ||||| || || || || ||| Sbjct 32406554 TCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTG 32406613 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | ||||| || ||| || || | ||||| Sbjct 32406614 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATG 32406673 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| |||||| || || |||||||| Sbjct 32406674 GTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 32406708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217176515771