Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq431 80.6 1e-10 >seq431 Length=160619 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38966 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 39025 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 39026 CTGCTCTATCCCGC 39039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181602270532122