Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq431 594 6e-165 seq9 122 1e-22 >seq431 Length=160619 Score = 594 bits (658), Expect = 6e-165 Identities = 713/962 (74%), Gaps = 5/962 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || |||| ||||| || || ||||||| || || | ||| | |||||| Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 |||| || || | |||||| | |||||||| || || || || || || || ||||| Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 ||| || || ||| | ||||| || || ||||||||||| ||||| ||||||| || Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 | | || || || ||||||| | || | || | |||||| | | || | | Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1239 Query 177884 ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGT 177943 || ||||| ||||||||||||||| | |||||| ||||||||||| |||||| ||| Sbjct 1238 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGT 1179 Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTC 178002 |||||| || || ||||||||||| || |||| || ||||| | ||||||| |||||| Sbjct 1178 TGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGT-TTTCTTGATCTATCCAATCGGTC 1120 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 |||| || || |||| ||||||||| || |||||||||||||| |||| |||| ||| Sbjct 1119 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 1060 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||| || |||||||| |||||||||||||| || |||||| | || || ||||| | Sbjct 1059 TATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 1000 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 ||||||| || || || ||| |||||||||||| | || || ||| | || Sbjct 999 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCA 940 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 | || || ||||||| ||| || || | ||||||| ||||| ||||| ||||||| Sbjct 939 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 880 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | ||||| ||||| || || |||||||| || || || ||||||||||||||||| | Sbjct 879 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 820 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGT 178362 ||||||| || ||||| | ||||||||||| || || ||||||||||| || ||||||| Sbjct 819 TCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 760 Query 178363 TCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGT 178422 ||||||| | ||| | ||| ||||| || ||||| ||||| ||||| |||||||| | Sbjct 759 TCACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 700 Query 178423 CCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCG 178482 | | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 699 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 640 Query 178483 GTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCA 178542 || || |||||||| ||||| ||| | ||| || ||||||||||| || || || || Sbjct 639 ACCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCATAACTTCCCTCTAGACCTAGCT 581 Query 178543 GC 178544 || Sbjct 580 GC 579 Score = 549 bits (608), Expect = 2e-151 Identities = 729/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | | |||| || || || ||||| |||||||| || || | || Sbjct 34763 TGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCT 34822 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| |||| || ||| | ||||| || | Sbjct 34823 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34882 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 179126 |||| || ||||| | || ||||||||| | ||||| ||| | ||||||| | || || Sbjct 34883 GGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCCGC 34940 Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 34941 AGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGC 35000 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || |||| || ||||| ||| | || || || |||| || || |||||||| Sbjct 35001 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCA 35060 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 ||| || |||| ||||| || || ||| | ||||| |||||||| || || ||| || Sbjct 35061 CGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCA 35120 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | || ||||| ||||| || || || ||||||| ||||| || || ||| ||||| Sbjct 35121 AT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 35179 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || ||||| || ||||| |||||||||||||||| |||||||| || | Sbjct 35180 TCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAG 35239 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || || || ||||| || || || |||||| | ||||| |||| Sbjct 35240 CTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTC 35299 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | |||||||||||||| ||| | |||| | ||||||||| | ||||||||||| | | Sbjct 35300 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 35359 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | || || ||||| || | ||||||||| || ||||| ||||| || || || Sbjct 35360 CCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 35419 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| || || || ||||| ||||| || || ||||| |||||||| || |||| Sbjct 35420 CAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 35479 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 35480 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 35539 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||| | ||| | | || |||| | | || || ||||| || || ||||| |||| Sbjct 35540 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATG 35599 Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845 | || || || || ||| | ||||| ||||||||||| || ||||| ||||| || | Sbjct 35600 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 35659 Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 | || |||||| | || || || | ||||||||| |||| || ||||| || |||| Sbjct 35660 AAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 35719 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 35720 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 >seq9 Length=38630433 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| | |||||| | ||||||||||| || || ||| |||| || ||||| || | Sbjct 34088367 CTGATGATAAATACATCTTAGATGCTGCTGAGGAGGCGGGTGTTGACCTGCCCTATTCTT 34088308 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAA-ATTAGTTGAAGGAACTGTAGATCAG 138645 | | ||||| || || || || |||||||| || |||| || | || | || ||||| Sbjct 34088307 GCAGGGCTGGAGCTTGCTCCACATGTGCTGGGAAGATTATTTCA-GGCTCAGTGGATCAA 34088249 Query 138646 TCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTA 138705 |||||| || |||||||||||| | ||||| | | |||| | | ||||||| || Sbjct 34088248 TCTGACGGTTCCTTCCTTGATGATAAACAAATGGAGGAGGGATATGTGCTGACTTGTGTT 34088189 Query 138706 GCATACCCCACATCCGATTGT 138726 ||||||| || || || ||| Sbjct 34088188 TCATACCCAACCTCGGACTGT 34088168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605663936967960