Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-13 >seq1 Length=37323695 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Minus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 |||||||| |||||||| |||| ||| || | || |||||| | | |||| Sbjct 11147972 TCCTTCTGGATATTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAG 11147913 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || |||||||||||| | ||| | ||| ||||||| ||||| ||||| ||||| | ||| Sbjct 11147912 ATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTG 11147853 Query 81762 TCAATCGTAT 81771 ||||| |||| Sbjct 11147852 TCAATAGTAT 11147843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903406332872160