Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10 114 3e-20 seq1 98.7 2e-15 seq4 93.3 1e-13 >seq10 Length=21822658 Score = 114 bits (126), Expect = 3e-20 Identities = 204/294 (69%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 ||||| ||| |||| || || || | ||||| | |||| |||| | || |||||| Sbjct 2025994 GAATTCATTAATAAGGAGCTTATTCTGTTTTCCATGGCTGATCTTCAAAGGTCAATTCCT 2026053 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | || ||||| |||| ||| || | ||||| | || ||| |||||| || Sbjct 2026054 TCAATGATTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTTTGTTCTTTCAAGAGG 2026113 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||| ||| |||||||| || |||||||||||||||| ||| | | | Sbjct 2026114 AATTTTGTAAAAGAAGCAAAGGTTGCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGCT 2026173 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | | || | ||||| || | || ||||||||| Sbjct 2026174 TACCATCATGGTGAGCAGAGTCT-TGCTA-GTACAATTGTTGGAATGGCACAAGATTTTG 2026231 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| |||| || || ||| |||||||||||| |||||| Sbjct 2026232 TGGGCAGTAACAACATAAACCTTCTCCATCCAGGTGGTCAATTTGGCACTCGTA 2026285 >seq1 Length=37323695 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| ||||| |||| || || || || | ||||| || ||||||||||| Sbjct 520138 CATTTAAATGATGGAGATTTTGTCCTTTTTAACCGTCAACCTAGTCTCCATAAAATGTCA 520079 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTG 305426 || |||| || | | ||| | ||||| | | | | |||||||| ||||| | || Sbjct 520078 ATCATGGGCCACAGAATCA--GGATTATGCCGTACTCTACATTTCGTCTAAATTTGTCTG 520021 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | |||| || ||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 520020 TTACTTCGCCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAAT 519961 Query 305487 CA 305488 || Sbjct 519960 CA 519959 >seq4 Length=31929104 Score = 93.3 bits (102), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 |||||||| || ||||| | |||||||| || | ||| | | ||| | | | Sbjct 2301846 AAGAAAGCCGAGTGGGCGTTGAAATGGATC---GACGGTTCGGAAACTTTCGCCGAACGG 2301902 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||||||||| || ||||| || ||||| || || |||||| ||||| ||| Sbjct 2301903 CTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTT 2301962 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||| | || ||||| || || ||||||||| | | || || || | || ||||| || Sbjct 2301963 TGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGA 2302022 Query 131981 GATGAAG 131987 ||||||| Sbjct 2302023 GATGAAG 2302029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806246197191