Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 7e-11 >seq1 Length=37323695 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || | || || ||| ||||||| | || || || | Sbjct 11148009 CATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTC 11148068 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| |||||||||||||| || || ||||| Sbjct 11148069 GGACACTATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 11148128 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | |||| | || |||||||| ||||||| || | | ||||| || Sbjct 11148129 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 11148188 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || || ||| |||| || || Sbjct 11148189 CATTCAAAAGGAGTCAACCCTTCACTTGGT 11148218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092002053920