Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 320 2e-81 >seq4 Length=31929104 Score = 320 bits (354), Expect = 2e-81 Identities = 414/563 (74%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||| | |||||| |||| ||| | ||||||| |||| |||| ||| Sbjct 2301441 GAGCCACTGCTCGCCTCGAACCCGGACCGGTTTTGCATGTTCCCGATCCAATACC--CGG 2301498 Query 1455776 A--TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||| Sbjct 2301499 AAGTATGGGAAATGTACAAGAAAG-CCGAAGCCTCCTTTTGGACCGCCGAGGAAGTCGAT 2301557 Query 1455834 CTCGGCGCCGAC--ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | || ||| |||||||| | || | ||| | ||| ||||| ||||||| Sbjct 2301558 CTCTCGTCGGATCTACG--CCACTGGGAAACTCTTACCGATGGCGAACGCCACTTCATCA 2301615 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||| ||| |||||||||||| ||| || || |||| Sbjct 2301616 CTCACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGTT 2301674 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || ||||| || |||||| | | ||||| ||| ||| || || ||||| |||||| Sbjct 2301675 CGGTTCATGAAGGAAGTCCAAATCGCCGAGGCTCGTGCGTTCTATGGCTTCCAAATCGCC 2301734 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 |||||||| |||||||| || | || ||||| | || || ||| |||||||| | Sbjct 2301735 ATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACATCAAGGACTCC 2301794 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 ||| ||| ||| ||||| | |||| |||| || ||||||| ||| || || ||| Sbjct 2301795 AACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCGTGTGTGGCTAAGAAAGCC 2301854 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTC 1456190 || |||||| |||| |||||| || || || ||||| ||||| ||||| || Sbjct 2301855 GAGTGGGCGTTGAAATGGATC------GACGGTTCGGAAACTTTCGCCGAACGGCTAATC 2301908 Query 1456191 GGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||||| |||| || || || || ||||| || ||||||||||| || |||||| | Sbjct 2301909 GCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTTGGTTA 2301968 Query 1456250 AAGAAGCGCGGCCTCATGCCCGG 1456272 || |||||||| | ||||| || Sbjct 2301969 AAAAAGCGCGGGTTAATGCCTGG 2301991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177769629257822