Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq431 601 4e-167 >seq431 Length=160619 Score = 601 bits (666), Expect = 4e-167 Identities = 711/960 (74%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || |||| ||||| || || ||||||| || || | ||| | |||||| Sbjct 1537 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1478 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || | |||||| | |||||||| || || || || || || || ||||| Sbjct 1477 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1419 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | || || ||||| || || |||||||| || |||| | Sbjct 1418 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1359 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || ||| | ||||| || || ||||||||||| ||||| ||||||| || Sbjct 1358 TTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATG 1299 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || || || ||||||| | || | || | |||||| | ||||| | | Sbjct 1298 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1239 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 |||||||| ||||||||||||||| | |||| | ||||||||||| |||||| ||| Sbjct 1238 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGT 1179 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||||| || ||||| || ||||| || | || || ||| || ||||||| ||||||| Sbjct 1178 TGCATATTCAGCTCCTGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCA 1119 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| |||||||| | ||||| || || ||||||||||| ||||||| |||| |||| Sbjct 1118 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 1059 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || ||||||||||| || |||||||| || |||||||| || || || ||||| Sbjct 1058 ATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 999 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 |||||| || || || |||||||| ||||| ||||| ||||| || ||| | | | Sbjct 998 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 939 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 ||||| || |||| ||||| || | ||||| | ||||| ||||| ||||| || Sbjct 938 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 879 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || || ||||| || || ||||| || || || || |||||||||||||||||| || Sbjct 878 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 819 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 |||||| || ||||| | ||||||||||| || || ||||||||||| || |||||||| Sbjct 818 CAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 759 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 |||||| | || | ||||| ||||| || ||||| ||||| ||||| |||||||| || Sbjct 758 CACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 699 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 698 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 639 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| ||||| || || || || || |||||||| || || || || || Sbjct 638 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 579 Score = 462 bits (512), Expect = 3e-125 Identities = 701/991 (71%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 34763 TGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCT 34822 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| |||| || ||| | ||||| || | Sbjct 34823 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34882 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGC 179410 |||| || || || | || ||||||||| | || || ||| | ||||||| | || || Sbjct 34883 GGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCCGC 34940 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 34941 AGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGC 35000 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || || |||| || ||||| ||| | || || || |||| || || |||||||| Sbjct 35001 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCA 35060 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 179589 ||| || |||| || || ||||| ||| | | |||||||||||||| || ||| | Sbjct 35061 CGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCA 35120 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 | | ||||||| ||||| || || || |||||||| |||||||| || || ||| | Sbjct 35121 ATTGC-GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 35179 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 |||| || ||||| | || || || |||||| || ||||| |||||||| || | Sbjct 35180 TCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAG 35239 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || | ||| | || || | || || || || || ||||| | ||||| || | Sbjct 35240 CTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTC 35299 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 |||||||||||||||| ||| || | || | || ||||| | ||||| ||||| | || Sbjct 35300 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 35359 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 | || || ||||| || | ||||||||| || |||||||| || || ||| | Sbjct 35360 CCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 35419 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || | ||||| |||||||| |||||||| || |||||||| ||||| || |||| Sbjct 35420 CAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 35479 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180009 | || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 35480 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 35539 Query 180010 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180069 ||| |||||| || |||| | | ||||| ||||| ||||| ||||| || | Sbjct 35540 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATG 35599 Query 180070 ATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCA 180129 | ||||| ||||| ||| | ||||| |||||||| || |||||||| |||||||||| Sbjct 35600 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 35659 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATG 180189 | || |||||| | || || || | ||||| ||| |||| | ||||| || |||| Sbjct 35660 AAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 35719 Query 180190 AGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | | ||||||| || || ||||| || Sbjct 35720 AAAACCTTATATTCCCTGAGGAGGTTCTACC 35750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606006335123280