Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq431 601 4e-167 >seq431 Length=160619 Score = 601 bits (666), Expect = 4e-167 Identities = 730/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || | || ||||| ||||| || Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || |||| ||| | || || || Sbjct 1504 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1446 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 1445 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1386 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || |||||||| || | || | ||| || || ||| | ||||| ||||| || Sbjct 1385 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1326 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||||||||| ||||| | ||||| ||| | || || || ||||||| | || | || Sbjct 1325 CTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1266 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 1265 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1206 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || |||||| ||||||||| || || || || || ||||| || Sbjct 1205 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGC 1146 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | ||||||| |||||||||| ||| ||||||| ||||||||| || || Sbjct 1145 TGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1086 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| |||| |||||||||| || ||||||||||||||||||||||| Sbjct 1085 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCC 1026 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 1025 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 966 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || || | | ||| || | ||||| || || | || || || | | Sbjct 965 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 907 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 906 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 847 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| || ||||| || || ||||| ||||||||||| | Sbjct 846 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAG 787 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || ||||||||||| ||| | || | || ||||| |||| Sbjct 786 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCA 727 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| || |||||||| |||||||| || | |||| ||||||| ||||| |||| | Sbjct 726 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 667 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | |||||||||||||||||||| ||||| | Sbjct 666 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 607 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | || |||||||| || ||||| |||||| Sbjct 606 CTCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 522 bits (578), Expect = 3e-143 Identities = 707/982 (72%), Gaps = 4/982 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || ||||| || ||| | || |||| ||| ||| | || Sbjct 34783 GACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 34842 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| | ||||| || ||||| || || || | || Sbjct 34843 TTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 34902 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACG 180228 ||||||| | ||||| ||| | ||||||| | || || || || || |||||| | Sbjct 34903 AGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATA 34960 Query 180229 CTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGT 180288 | | | |||||| | | |||| ||||||||||| | || || |||| || | Sbjct 34961 GTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 35020 Query 180289 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTG 180348 |||| ||| | || || || |||| || || ||||||||||| || |||| ||||| | Sbjct 35021 GGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACGGCGCTTTCGGACTAATAG 35080 Query 180349 GATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTA 180408 | |||||| |||| || |||||||| || || | || | || ||||| ||||| | Sbjct 35081 GTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTTCAATTGCGACCTTATAATGCAA 35140 Query 180409 TTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTC 180468 | |||||||||||||| || ||||| ||||| ||||| || || || ||||| |||| Sbjct 35141 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 35200 Query 180469 AGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT 180528 | || ||||||||||||| ||| |||||| |||||||| || ||| ||||| | |||| Sbjct 35201 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCT 35260 Query 180529 TTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 || | || || || || || ||||| | ||||| || ||||||||||||||||| ||| Sbjct 35261 TTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTG 35320 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 || | || | || |||||| || || ||||| | || ||||| || || | | || Sbjct 35321 TATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTGGAAAATACTTTATTTG 35380 Query 180649 AAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTT 180708 ||||||| || ||||| || || || ||| | |||| |||| || ||||||| Sbjct 35381 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 35440 Query 180709 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 180768 | || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 35441 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 35500 Query 180769 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180828 | || ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 35501 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 35560 Query 180829 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCA 180888 |||| | | ||||| ||||| ||||| ||||| || || ||||| || || ||| Sbjct 35561 TTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 35620 Query 180889 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAG 180948 | ||||| ||||||||||| || ||||| ||||||||||| || || || || || || | Sbjct 35621 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGG 35680 Query 180949 GACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAG 181008 | | ||||| ||| |||| || ||||| || || |||||| | || |||||||| | Sbjct 35681 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 35740 Query 181009 AAGTTCTACCAAGAGGTAACGC 181030 | |||||||| | || ||||| Sbjct 35741 AGGTTCTACCCCGTGGAAACGC 35762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610326311849280