Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq1 134 2e-26 >seq4 Length=31929104 Score = 145 bits (160), Expect = 1e-29 Identities = 423/647 (65%), Gaps = 6/647 (1%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| || || ||| ||||| || ||||| | ||||||||| ||||||||||| ||| Sbjct 2302357 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTAGTTTTACCT 2302298 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | ||| || || |||||| ||||||| || |||| |||| || | || | Sbjct 2302297 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTACATCTTCCCGTAC 2302238 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || || || | ||| | |||||| || || || ||||| |||||| || | Sbjct 2302237 CCCAACGCTCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 2302178 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || | | | || ||||| || || |||||| | || || || || Sbjct 2302177 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 2302118 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAA 39608 || || | | || | | | || ||| || ||| | | || | | | || Sbjct 2302117 GCGTCCCTCACTAACCCTCTCACGCGCTCTTCGCTCAGCTTTGACCGGAGGAGGGAGTA- 2302059 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 || ||||| ||||| || ||||| || || ||||||| ||||| ||||| || | Sbjct 2302058 -CAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | || | ||||||||||| || |||||||| | ||||||||| || ||| ||| |||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGC-GCAGAAACTTCCA 2301941 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| || ||||| || ||||| || | || | || || || || | Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 2301881 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | ||||| ||| ||||| || |||||||| ||||| |||| |||||| | Sbjct 2301880 CCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACG 2301821 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||||| | ||||| | || || | || || || | | |||||| Sbjct 2301820 GCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTA 2301761 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 ||||| || || ||||| ||||| || || || || || || || || Sbjct 2301760 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 2301714 >seq1 Length=37323695 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||||| ||| | |||| |||||| || | ||| || Sbjct 6395078 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 6395137 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||||||||| ||||||||| ||| | || |||||||| || ||| Sbjct 6395138 ATTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGA 6395197 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| ||||| || |||||||| Sbjct 6395198 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 6395257 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 6395258 TCCTTCAATACTATCATCTTTCAT 6395281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||| ||||| || |||||||||||| ||| ||| | || | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||||| || || || || || ||||||||| | || || | ||| ||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||||| || | | |||||| ||||| || | || || Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 6395602 GTTTTAAAGCCAAAGTA 6395618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905099278840