Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 159 3e-34 >seq4 Length=31929104 Score = 159 bits (176), Expect = 3e-34 Identities = 248/349 (71%), Gaps = 14/349 (4%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| || ||||| ||||| |||||||| || || || ||||| ||||| || | Sbjct 2301714 TTCTATGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTT 2301773 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || |||||||| || |||| ||| | || | || | || | |||||||| Sbjct 2301774 GAAACTTACATCAAGGACTCCAACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTG 2301833 Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGAT 44116 || || | ||| ||||| || ||||| | |||||||| | ||| || Sbjct 2301834 CCGTGTGTGGCTAAG---AAAGCCGAGTGGGCGTTGAAATGGATCGACGGTTCG---GAA 2301887 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 |||| | ||||| || |||| ||||| |||||||| |||||||| || ||| Sbjct 2301888 ACTTTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGT 2301947 Query 44177 TT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 || |||| | |||||||||||||| || || || || |||||||| || || || || || Sbjct 2301948 TTCTGCG-CTATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAA 2302006 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||||| || |||||||| | ||||||||||| ||||||||| Sbjct 2302007 CGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCGCTTGCTTG 2302055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453912238155