Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-23 seq9 107 2e-18 seq5 96.9 3e-15 seq7 89.7 4e-13 >seq1 Length=37323695 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||||||| | | |||| ||||||||||||| || ||| Sbjct 32435718 GTGGATTCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCG 32435777 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || |||||||| || | || || || || ||||||| ||| Sbjct 32435778 GCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTG 32435837 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||| || ||||| ||||| | || ||||| || ||| Sbjct 32435838 ACATTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 32435897 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 32435898 TTGACGAAGATCTGCAT 32435914 >seq9 Length=38630433 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| || | || | || | || || || || || ||||||||||| Sbjct 27803492 TGCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCCG 27803433 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || || ||| | || | |||||||| ||||| | Sbjct 27803432 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAG 27803373 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | ||| | Sbjct 27803372 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGA 27803313 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | ||||| || || ||||| || ||||| ||||| Sbjct 27803312 CTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 27803264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || | ||||| || | || || || ||||| |||||||| || Sbjct 27803264 TGCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCG 27803205 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||||| || || || |||||| | || | ||||||||||| || | Sbjct 27803204 CAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAG 27803145 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||||| | || | Sbjct 27803144 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCA 27803085 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||| || || |||||||| ||||| ||||| Sbjct 27803084 CCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 27803036 >seq5 Length=39371879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| ||||| || || || | || |||| || |||||||| ||| Sbjct 2688688 GTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2688747 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| |||||||| || || || | || ||||| || ||| ||| || Sbjct 2688748 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTG 2688807 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || | |||||| |||| |||| Sbjct 2688808 ACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2688867 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 2688868 TTGACAAAGATTTGCATA 2688885 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || ||| || | ||| | || || || ||||| || ||||| || | Sbjct 2688430 CCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCC 2688489 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | |||| || ||||| || || ||| | || | || ||||| || || || Sbjct 2688490 AAGGTCCTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGG 2688549 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| || | | | || | ||||| | | || || Sbjct 2688550 ATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACC 2688609 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||| || || |||| ||||| |||||||||||||| Sbjct 2688610 TCCAGGGTTATAGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2688656 >seq7 Length=21614486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || ||||| |||||||| | || || || ||||| || || ||||| | Sbjct 2882788 CCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTG-C 2882846 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | | | | || || ||||| || || || |||| | | |||||| || || || Sbjct 2882847 AAGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 2882906 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| ||||||| ||| | | | || | ||||| | | || || Sbjct 2882907 GATACCCTCCTTATCTTGGATCTTGGCTTTAACGTTGTCAATTGTGTCAGAGCTCTCCAC 2882966 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| || |||| ||||||||||| || ||||| Sbjct 2882967 CTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2883014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || || | |||||| |||||||| | || || || || ||||| || ||||| | Sbjct 2896232 TGCCACCACGAAGCCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTG 2896291 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | ||||| |||||||| ||||| |||| | | ||| || ||||| Sbjct 2896292 CAAGGGTTCTGC-CATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGT 2896350 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | |||||| || || |||||| |||| | || | || || | || Sbjct 2896351 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2896410 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | ||| || | ||| || || |||||||||||||| || ||||| Sbjct 2896411 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTC 27091 ||||| |||||||| | || || || ||||| || || ||||| || || | | | | Sbjct 2895790 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTG-CAAGTGTCCTCCC 2895848 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||| ||||| || || || |||| | | |||||| || || || | |||||| || Sbjct 2895849 ATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTT 2895908 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 ||| ||||||| ||| | | || | ||||| | | || || || | ||| || Sbjct 2895909 ATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGAT 2895968 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| ||||||||||| || ||||| Sbjct 2895969 GGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2896004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932167899272