Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-13 seq4 87.8 2e-12 >seq2 Length=41236440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| ||||| ||||| ||||| || || || Sbjct 18386905 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATATCTGCCCGGTTAGTTGCTGC 18386846 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || |||| ||| || || |||| ||||| |||||||| |||||||| || || || Sbjct 18386845 TATTACAATGATACCTGT---GTTACCCTCAAAACCATCCATTTCAGTCAAAAGCTGGTT 18386789 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGAC 14241 | || || || | |||||| ||| || | ||| | | | |||| || || Sbjct 18386788 AAGAGTCTGCTCCCTTTCATCGTTCCCACCACCAATACCAGTTCCTCTTTGCCGTCCAAC 18386729 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAG 14299 || ||||||||||| | || || ||||| || ||| || ||| |||| ||| Sbjct 18386728 AGCATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGC--CTTCTTGAAG 18386671 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| ||| || ||||| |||||||| || ||||| | | | ||| Sbjct 18386670 AGATCACGAACTCGAGAGGCGCCAACACCAACAAACATTTCAACAAACTCAGAACCTGAA 18386611 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || ||| || || || |||||| || || || ||| || || ||||| || Sbjct 18386610 -ATGGAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTTCC 18386552 Query 14419 CGTCCCTGG 14427 || || || Sbjct 18386551 AGTTCCAGG 18386543 >seq4 Length=31929104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 |||||||| || || || ||||| | || |||||||| | || ||||| | || Sbjct 2302036 TGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCG 2301977 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||| || ||||| || || || || || ||||||||||| ||||| ||||| || Sbjct 2301976 CGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCCACGCAA 2301917 Query 130148 GCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || || || | || || || || |||| | | || || | ||| |||| ||| Sbjct 2301916 GCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC----CGTCGATCCATTTCAACGC 2301861 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||||| || || || | | |||||| || || | || || | ||||| ||||| Sbjct 2301860 CCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGGAAGAGCCGGTTCTT 2301801 Query 130267 TTCTGATGGA-TCTTTGATGTA 130287 ||| | |||| || |||||||| Sbjct 2301800 TTC-GTTGGAGTCCTTGATGTA 2301780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431868180360