Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 152 6e-32 seq4 102 1e-16 seq1 102 1e-16 >seq2 Length=41236440 Score = 152 bits (168), Expect = 6e-32 Identities = 239/336 (71%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| ||||| | || || || || || || |||| |||||||| | | ||||| Sbjct 18386875 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAA 18386816 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || |||||||| ||||||| ||| || |||| |||||| ||| | Sbjct 18386815 ACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTCTGCTCCCTTTCATCGTTCCCACCACC 18386756 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||||| | | |||| ||| || |||||||| ||||| | ||||| || || || Sbjct 18386755 AATACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACAGGG 18386696 Query 9736 TTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 ||| || | | | |||| |||||||| || || || |||||| ||||||||| Sbjct 18386695 GGCATTCTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAGGCGCCAACACCAACA 18386638 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 ||||| || ||||| | | | ||| || | || ||| || ||| || |||||| || Sbjct 18386637 AACATTTCAACAAACTCAGAACCTGAA-ATGGAGAAGAATGGCACACCAGCTTCACCAGC 18386579 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || ||| ||||||||||| || || || || Sbjct 18386578 AATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGG 18386543 >seq4 Length=31929104 Score = 102 bits (112), Expect = 1e-16 Identities = 168/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 || ||||| | |||||| | ||| || ||||||| |||||| | |||||||| || Sbjct 2301798 GAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCGTGTGTGGCTAAGAAAGCCGAG 2301857 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821 ||||| |||| ||| | || ||| | || || || || || |||| ||| Sbjct 2301858 TGGGCGTTGAAATGGATCGACGGT---TCGGAAACTTTCGCCGAACGGCTAATCGCTTTT 2301914 Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || || || || || || ||||||||||| ||||||||||| | |||| | || ||| Sbjct 2301915 GCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTTGGTTAAAAAAG 2301974 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 || || | ||||| || | ||||| |||||| | ||||| || || || || ||| Sbjct 2301975 CGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAGATGAAGGTCTC 2302034 Query 94942 CA 94943 || Sbjct 2302035 CA 2302036 >seq1 Length=37323695 Score = 102 bits (112), Expect = 1e-16 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198 |||| |||| || ||| ||||| | ||||||||||||| | ||| |||| || | Sbjct 6395633 GACTTTGACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCCTACCTCTTGAAAGT- 6395575 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || || |||| || || ||||||| ||| | || || | || |||| Sbjct 6395574 TCAAGGGAAGGTT-ATAGAAAGGCCTCAACACATGTTAATGAGGGTTGCTGTTGGAATTC 6395516 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 6395515 ATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCA 6395456 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | ||||| || ||||||||||| |||||||| || ||| Sbjct 6395455 CTCATGCTTCTCCAACACTTTTCAATGCTGGAACACCAAGGCCTCAA 6395409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257657682440