Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 >seq4 Length=31929104 Score = 122 bits (134), Expect = 1e-22 Identities = 368/554 (66%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| |||||||| | || || ||| ||| |||||| Sbjct 2301492 TACCCGGAAGTATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAGGAA 2301551 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | || ||| | || || | ||||| | || | | | ||| | || ||| Sbjct 2301552 GTCGATCTCTCGTCGGATCTACGCCACTGGGAAACTCTTACCGATGGCGAACGCCACTTC 2301611 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 |||| ||||| ||||||||||| || ||||| || || | |||||| | | | Sbjct 2301612 ATCACTCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCCTCGAAAATCTCGCC 2301671 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812 | || ||||| ||||| || |||||||| || ||||||| | | || || Sbjct 2301672 GTTCGGTTCATGAAGGAAGTCCAAATCGCCGAGGCTCGTGCGTTCTATGGCTTCCAAATC 2301731 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872 | || ||| |||||||||||||| ||| ||| | | || | | ||||||| Sbjct 2301732 GC-CATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACATCAAGGA 2301790 Query 59873 -TCCG--GAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAAC 59928 ||| ||| |||| | || || |||| ||| | || || || || | || Sbjct 2301791 CTCCAACGAAAAGAA--CCGG-CTCTTCCACGCCGTCGAAACAGTGCCGTGT-GTGGCTA 2301846 Query 59929 AAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAACGTC 59985 | ||||| || ||||| || | ||||| || || | ||| | | || || |||| | Sbjct 2301847 AGAAAGCCGAGTGGGCGTTGAAATGGATCGACGGTTC-GGA--AACTTTCGCCGAACGGC 2301903 Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 | || |||||||| ||||||||||| || ||||||||||| ||||| ||||| || | Sbjct 2301904 TAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTT 2301963 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 || | |||||||| || | ||||| || | | |||||| |||||| | || || || | Sbjct 2301964 GGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAG 2302023 Query 60106 ACGAGGGCCTCCAT 60119 | || || |||||| Sbjct 2302024 ATGAAGGTCTCCAT 2302037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521844822640