Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq431 562 4e-155 >seq431 Length=160619 Score = 562 bits (622), Expect = 4e-155 Identities = 702/957 (73%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||||||||| | ||||| || | | || || | | ||| Sbjct 1530 TTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1472 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1471 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 1412 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || || || || || | | || | || Sbjct 1411 TCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 1352 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||| ||||||||||| ||| | ||||| |||||| | ||| Sbjct 1351 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATGGTTATAC 1292 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 1291 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1232 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| ||||||||| ||||||||| Sbjct 1231 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATAT 1172 Query 176506 TCTGCACCAGTATCTGCAGC-GATG--GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || || |||||| | || || |||||| | |||||||| ||||||||||| Sbjct 1171 TCAGCTCCTGT---TGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCAAGGA 1115 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 ||| ||||||||||||||||| || || || ||||| |||||||| ||| |||||||| Sbjct 1114 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1055 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || || |||||||| || ||||||||||| || ||| | || ||||| ||||| || Sbjct 1054 CAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 995 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAG 176742 || || || || ||| || ||||| || | || || ||| | | || || Sbjct 994 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAA 935 Query 176743 ACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATAC 176802 || || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || Sbjct 934 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAT 875 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 || || |||||||| || ||||| ||||| || | |||||||| |||||| |||||| Sbjct 874 AATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 815 Query 176863 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACT 176922 || || | | | ||||||||||| || || | || || || | |||||||| || Sbjct 814 AATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACC 755 Query 176923 GCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC 176982 || | ||| || |||| ||||| |||||||| || |||||||| |||||||| ||||| Sbjct 754 GCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTA 695 Query 176983 TTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTT 177042 | || | ||| || ||| ||| |||| ||||| |||||||||| |||||| Sbjct 694 GTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTT 635 Query 177043 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 634 GGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 132 bits (146), Expect = 6e-26 Identities = 203/285 (71%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || ||||| || ||| | || | |||||| | | ||| || || Sbjct 125032 ACCTGTAACTATTCAATACCCTTATGAAAAATTAATCACATCAGAGCGTTTCCGCGGGCG 124973 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| | ||||||||||| Sbjct 124972 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGCCCTAT 124913 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAA--CT 19468 |||| || || || |||||| ||| ||| | | | || || || || || Sbjct 124912 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACGGATATTCGAAAAA-AACGATTGCT 124856 Query 19469 TAGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTG 19528 || |||| || || || ||| ||||| || || ||||||||||| |||||||| Sbjct 124855 TA---ATTACAGTATTGATTTCGGAATTTGTATATTTTGTGGTAACTGCGTTGAGTATTG 124799 Query 19529 CCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 124798 TCCAACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 124754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603491148673920