Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 >seq7 Length=21614486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| ||||| ||||| || |||||| | || || || || | Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || ||| || || ||||| |||||| | || || | Sbjct 2883182 GATACCATTGACAAT--GTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATC 2883125 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 | || || | || |||||||| ||||| ||||| || | | | ||||| | |||||| Sbjct 2883124 AACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTG-CAGATTAC 2883066 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 2883065 AATATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 2883016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||||| ||||| || ||||| | || || || || | Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || ||| || || ||||| |||||| | || || | Sbjct 2896172 GATACCATTGACAAT--GTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATC 2896115 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 | || || | || |||||||| ||||| ||||| || | | | ||||| | |||||| Sbjct 2896114 AACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTG-CAGATTAC 2896056 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||| || | || ||||| ||||| ||||||| || Sbjct 2896055 AATATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 2896006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860530721537