Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 102 7e-17 seq1 98.7 9e-16 >seq5 Length=39371879 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||||||||| || | || || |||| || |||||||| || || || Sbjct 2688693 CTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2688752 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||| ||||||| || | || ||||||||| |||||| |||| ||| Sbjct 2688753 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGA-CGT 2688811 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| ||| || || | ||||| |||| || |||| ||||| | Sbjct 2688812 TGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGA 2688871 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 2688872 CAAAGATTTGCAT 2688884 >seq1 Length=37323695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| |||| | || | ||||||||| || ||| ||| || || |||||||| || Sbjct 11148012 CATGCCACCTCGAAGACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTC 11147953 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| |||||||||||||| ||||| ||||| | || || || | Sbjct 11147952 AGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGG 11147893 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 || | | || ||||| ||| ||| ||| | | | | ||||| ||| Sbjct 11147892 AGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCT--- 11147836 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| |||||| | ||||| || || || || |||||||||||||| Sbjct 11147835 CTCAACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 11147782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || |||||||| || || || ||||| | || || Sbjct 11147763 CACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCGACCATCTTC 11147704 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| ||||| ||||| | |||||||| | || | | || ||||| Sbjct 11147703 AAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTG 11147644 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| ||| || || | ||||| | Sbjct 11147643 GATCTTAGCCTTGACATTGTCAATAGTATCAGAGCT---CTCAACCTCAAGGGTGATGGT 11147587 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| |||||||||||||||| Sbjct 11147586 CTTGCCTGTTAGGGTTTTCACAAAGATTTGCATCT 11147552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543343677503