Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq1 107 1e-18 seq9 104 2e-17 seq7 98.7 7e-16 seq5 91.5 1e-13 >seq6 Length=26303135 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || || || || ||||| || ||| | || || || | || Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| ||||| ||||| | || |||||||| Sbjct 25054393 GATACCATTGATAATGTTAAGGC-AAAGATTCAGGACAAGGAAGGGATTCCACCAGATCA 25054451 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || |||||||| || || ||| ||||||| | | | ||| | | |||||||| Sbjct 25054452 GCAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAA 25054511 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 25054512 TATTCAGAAGGAGTCCAC 25054529 >seq1 Length=37323695 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || |||||||||||| | || || || | || Sbjct 11148010 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCG 11148069 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || ||| || ||||| ||| | || |||||||| Sbjct 11148070 GACACTATTGACAATGTCAAGGC-TAAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 11148128 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||| ||||| | | | || | | ||||| || Sbjct 11148129 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 11148188 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| ||||| || | || || ||| Sbjct 11148189 CATTCAAAAGGAGTCAACCCTTCACTTGGTT 11148219 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || |||||||| | || || ||||| ||| | || || ||||| || || ||||||||| Sbjct 8434106 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 8434165 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || | | ||||| ||||| ||||| ||||||||| | || | ||||| Sbjct 8434166 GATGGCCGAACGCTTGCTGATTATAACATCCAAAAGGAGTCCACACTTCACCTTGTTTTG 8434225 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 8434226 AGGCTTAGGGGAGGA 8434240 >seq9 Length=38630433 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || ||||| ||||| ||||| || || | Sbjct 27803033 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 27803092 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| ||||| | || || ||| Sbjct 27803093 TCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGAT 27803152 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| || || || |||||||| ||||| ||||||| || || | | |||||| Sbjct 27803153 CAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTAC 27803212 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || ||||| || || || Sbjct 27803213 AATATCCAAAAGGAATCGAC 27803232 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||||||| | || || ||||| || ||||| || || || || Sbjct 27803492 ATGCAGATTTTCGTTAAAACCTTGACCGGGAAAACTATTACTCTGGAGGTAGAGAGTTCG 27803551 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| || || ||||| | || || ||||| Sbjct 27803552 GATACAATTGATAACGTCAAGGCAAAAATCCAGGATAAGGAAGGGATCCCTCCGGATCAG 27803611 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||| ||||| || || |||| |||| | || | | ||||||||| Sbjct 27803612 CAGAGGTTGATATTCGCCGGGAAGCAGTTGGAGGACGGCAGGACCCTTGCGGATTACAAC 27803671 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 27803672 ATCCAGAAGGAGTCCAC 27803688 >seq7 Length=21614486 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| ||||| || || || | |||||||| | Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| || || ||||| |||||| | || ||||||||| Sbjct 2896172 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2896113 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | ||||||||||||||||| |||| || | | || | | |||||||| Sbjct 2896112 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2896053 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2896052 ATCCAAAAGGAGTCAAC 2896036 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| ||||| || || || | |||||||| | Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| || || ||||| |||||| | || ||||||||| Sbjct 2883182 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2883123 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | ||||||||||||||||| |||| || | | || | | |||||||| Sbjct 2883122 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2883063 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2883062 ATCCAAAAGGAGTCAAC 2883046 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||| | || || ||||| |||||| | || || || | | Sbjct 2883015 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2882956 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| || ||||| | || || || || || ||| | || || || | Sbjct 2882955 TGACACAATTGACAACGTTAAAGC-CAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 2882897 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || || ||||| || || || || || || | | || | | || || | Sbjct 2882896 AACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTTGCAGACTATA 2882837 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| ||||| ||||| || | ||||| ||||| | || ||||||| Sbjct 2882836 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTGAGAGGAGG 2882788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||| | || || ||||| |||||| | || || || | | Sbjct 2896005 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2895946 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || || || || ||| | || || || | Sbjct 2895945 TGACACAATTGACAATGTCAAAGC-CAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 2895887 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || || ||||| || || || || ||||| | | || | | || || | Sbjct 2895886 AACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGGAGGACACTTGCAGACTATA 2895827 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||||| || | ||||| || || Sbjct 2895826 ACATCCAAAAGGAGTCAACCCTGCATTTGGTCTT 2895793 >seq5 Length=39371879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||| | || ||||| || || || || || || || | || Sbjct 2688656 ATGCAAATCTTTGTCAAAACCTTGACAGGAAAGACTATAACCCTGGAGGTCGAGAGCTCG 2688597 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | || || ||||| | || ||||| || Sbjct 2688596 GACACGATTGATAACGTTAAGGCCAAGA-TCCAAGATAAGGAAGGGATCCCACCAGACCA 2688538 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || || || || || || || |||| | || || | |||||||| Sbjct 2688537 ACAACGATTGATCTTCGCTGGGAAGCAGCTTGAGGACGGGAGGACCTTGGCTGATTACAA 2688478 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||| || || || | ||| | ||||| ||| | || |||||| Sbjct 2688477 CATACAAAAGGAATCAACCCTTCATCTTGTTTTGAGGCTTCGTGGAGGA 2688429 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || ||||| ||||| |||||||| || | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||||||||||| | || || || ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| ||||| ||||| |||| || ||||| | ||||| || Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAT 2688705 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2688704 ATCCAAAAGGAGTCGAC 2688688 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||| | || |||||||| ||||| | || || || | Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || | || ||| | || | ||| ||| || || ||||| | || ||||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCCCCAGATC 2688311 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || |||||||| || ||| |||| || | | ||||||| ||||| | Sbjct 2688310 AGCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATA 2688251 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 2688250 ACATTCAGAAAGAGTCTAC 2688232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007824498948