Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 >seq4 Length=31929104 Score = 138 bits (152), Expect = 1e-27 Identities = 556/867 (64%), Gaps = 9/867 (1%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| ||||| || |||| || ||||||||||||||||| |||| |||||||| Sbjct 2302343 TTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTAGTTTTACCTTGCAACGAAATCAG 2302284 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| ||||||| || |||| | ||||| || | || | ||| | | Sbjct 2302283 TTCCATCCAATCAAAAGGGTTAGCCACATTGTACATCTTCCCGTACCCCAACGCTCCCAA 2302224 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || || || || || || ||||| ||||| || || | ||| || |||| || Sbjct 2302223 CAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCGTTCATCCCAACCAA 2302164 Query 4436 T-CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | | ||| || || || | | |||||| |||||| || || || | | || Sbjct 2302163 TGCGCAC-GGCAGAGCATCACATACAAACTCCCTCTCTATATCCACTGCGTCCCTCACTA 2302105 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCA 4553 || | | |||| | || | | || | | ||| || || || Sbjct 2302104 ACCCTCTCACGCGCTCTTCGCTCAGCTT-TGACCGGAGGAGGGAGTACAGCAAGCAAGCG 2302046 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 ||||| ||||| | |||||| |||| || | ||||| || || |||||||| ||| Sbjct 2302045 AAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAATCCAGGC 2301986 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 ||||| || | |||||| | ||||||||||||| || ||||| ||||| || ||| Sbjct 2301985 ATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAAATCCCT 2301926 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || ||| ||||| || | || || |||| | | | | | |||||| Sbjct 2301925 TCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAG---TTTCCGAACCGTCGATCCAT 2301869 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 || || ||||| | ||||| || || ||||| | ||| | | |||| || | Sbjct 2301868 TTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGGAAGAGC 2301809 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | ||||| | ||| | || ||||| || | || || |||||||| || || Sbjct 2301808 CGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATACATCTCGGAG 2301749 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAAC 4912 || |||||||| || || || || || || || || ||| | ||| || | | ||| || Sbjct 2301748 TGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCCTCGGCGATTTGGAC 2301690 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| || || | | | | |||||| || || || || |||||| || || Sbjct 2301689 TTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGGCTGCGAAGAA 2301630 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 || | || |||| || |||| ||||| || |||| ||| ||||||| | | Sbjct 2301629 GGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTCCCAGTGGCGTAG 2301570 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||| | | ||| ||||| || | |||||||| || ||||| ||||| |||||||| Sbjct 2301569 ATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTTTCTTGTACAT 2301510 Query 5093 AGACCAAATATCAGGATACTGAATCGG 5119 ||| | || || || || ||||| Sbjct 2301509 TTCCCATACTTCCGGGTATTGGATCGG 2301483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047356788523