Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq1 100 4e-16 >seq4 Length=31929104 Score = 147 bits (162), Expect = 3e-30 Identities = 384/582 (66%), Gaps = 8/582 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| ||||| ||||||||||||| ||||| ||||| || || || Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||||| || || ||||| | ||||||||| || |||| |||||| ||| Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAG 2301935 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || ||||| ||| ||||| ||| | || | || || || | | || Sbjct 2301934 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGTCG 2301875 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| ||||| || || ||||| ||||| |||| |||||| | || | Sbjct 2301874 ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGG 2301815 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| ||| ||||| ||| || || | |||||| || | | ||||||||||| Sbjct 2301814 AAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATACATC 2301755 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| |||||||| || || || || || || || || | || || | ||| Sbjct 2301754 TCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGGCGATT 2301695 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || ||| | || || | || | ||| || || || ||||| || || Sbjct 2301694 TGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGGCTGCG 2301635 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCG---TTGG-AAGTCAGTTTATTCCA 48613 || || || | || || | || || | |||| | || ||| |||| | ||| Sbjct 2301634 AAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAG--AGTT--TCCCA 2301579 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || | ||| || | ||| ||||| || || |||||||| || || || ||||| Sbjct 2301578 GTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTTT 2301519 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || ||||| | ||||| || ||||||||| ||||| || Sbjct 2301518 CTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAACAT 2301477 >seq1 Length=37323695 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||| |||||| |||||||| ||| |||||||| || |||||| ||| ||| || Sbjct 6394591 CTCTCGTTCATAATGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAGGCC 6394650 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAA 78015 || ||||| || || | |||||||| | |||| | | || |||| || ||||| Sbjct 6394651 TGGTGCCTCATTAGGACAGAATAATGACCACTGCCCAT-TACTTTGGACTCTTTGCATAA 6394709 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| | ||| |||||| ||||||||| || | | ||| ||||| Sbjct 6394710 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCACGAGCCCGATGCTCTTC 6394761 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || |||| ||| | |||| || |||||| | ||| || Sbjct 6395079 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCCA 6395138 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| || || Sbjct 6395139 TTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGAG 6395198 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 6395199 ACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATATT 6395258 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 6395259 CCTTCAATACTATCATCTTTCAT 6395281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665057471840